当前解析结果
SmilChr02G002897| 统一新 Gene ID | SmilChr02G002897 |
|---|---|
| 名称 | SmilChr02G002897 |
| 描述 | fluoride export protein 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 49243032 - 49246861 / - |
| NCBI Gene ID | LOC131011923 |
|---|---|
| GeneID | 131011923 |
| locus_tag | - |
| NCBI Name | LOC131011923 |
| 原始查询 | LOC131011923 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fluoride export protein 1-like |
| 产物 | fluoride export protein 1-like |
| Arabidopsis | AT2G41705 (AT2G41705)camphor resistance CrcB family protein [Source:NCBI gene (formerly Entrezgene);Acc:818769] identity=56.6; qcov=0.954; evalue=2e-152; confidence=high |
| Rice | Os10g0567000- identity=45.2; qcov=0.991; evalue=1.57e-106; confidence=high |
| GO | GO:0016020 (membrane); GO:1903424 (fluoride transmembrane transport); GO:1903425 (fluoride transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF02537 (CRCB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011923 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057795807.1 |
| 2 | Cell membrane | 细胞膜 | 0.80000 | XP_057795807.1 |
| 3 | Vacuole | 液泡 | 0.80000 | XP_057795807.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057795807.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057795807.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:49243465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr2:49243489 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,B121,B23,D8 |
Chr2:49243495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A22,B121,B23,D8 |
Chr2:49243564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:49243674 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B63,B81,B83,C76 |
Chr2:49243746 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr2:49243762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B18,B61,B98 |
Chr2:49243888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B63,B81,B83,C76 |
Chr2:49244172 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,D8,D9 |
Chr2:49244223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr2:49244245 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | C24 |
Chr2:49244245 |
GT |
G |
1bp_deletion | CDS_variant | 1 | C24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795807.1PF02537
CRCB 144-260 aa
PF02537
CRCB 329-442 aa
XP_057795808.1PF02537
CRCB 144-260 aa
PF02537
CRCB 329-442 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795807.1 |
Pfam | PF02537 |
CRCB | Family | 144 | 260 | 3e-34 | 118.1 | CrcB-like protein, Camphor Resistance (CrcB) |
XP_057795807.1 |
Pfam | PF02537 |
CRCB | Family | 329 | 442 | 3e-34 | 118.1 | CrcB-like protein, Camphor Resistance (CrcB) |
XP_057795808.1 |
Pfam | PF02537 |
CRCB | Family | 144 | 260 | 3e-34 | 118.1 | CrcB-like protein, Camphor Resistance (CrcB) |
XP_057795808.1 |
Pfam | PF02537 |
CRCB | Family | 329 | 442 | 3e-34 | 118.1 | CrcB-like protein, Camphor Resistance (CrcB) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。