Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002910`

染色体: Chr02 坐标: 49407688-49432281 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002910`
名称	SmilChr02G002910
描述	probable CoA ligase CCL8
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	49407688 - 49432281 / `+`

ID 对照

NCBI Gene ID	`LOC131011936`
GeneID	`131011936`
locus_tag	`-`
NCBI Name	`LOC131011936`
原始查询	`LOC131011936`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable CoA ligase CCL8
产物	probable CoA ligase CCL8
Arabidopsis	`AT3G16170` (AAE13) AMP-dependent synthetase and ligase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820862] identity=68.2; qcov=0.953; evalue=0; confidence=high
Rice	`Os01g0761300` - identity=78.3; qcov=0.513; evalue=8.42e-144; confidence=medium
GO	GO:0006631 (fatty acid metabolic process); GO:0031956 (medium-chain fatty acid-CoA ligase activity)
KEGG	smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00501 (AMP-binding)
InterPro	-
eggNOG	-
NR	GeneID:131011936

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057795823.1`
2	Mitochondrion	线粒体	0.80000	`XP_057795823.1`
3	Nucleus	细胞核	0.00000	`XP_057795823.1`
4	Chromosome	染色体	0.00000	`XP_057795823.1`
5	Centromere	着丝粒	0.00000	`XP_057795823.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:49422906`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B55
`Chr2:49422906`	`TC`	`T`	1bp_deletion	CDS_variant	1	B55
`Chr2:49422974`	`G`	`GCT`	2bp_insertion	frameshift_variant	2	C85,D7
`Chr2:49422974`	`G`	`GCT`	2bp_insertion	CDS_variant	2	C85,D7
`Chr2:49423301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr2:49424309`	`G`	`A`	EMS_canonical_SNV	stop_gained	32	B110,B112,B114,B115,B133,B15,B20,B4,B49,B55,B57,B62,B72,B85,B88,B96,C31,C33,C34,C46,C47,C49,C51,C52,C69,C76,C77,C80,C83,C86,C87,D1
`Chr2:49424547`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B53,B71,C53
`Chr2:49424642`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A10,B11,B66,C44,C55
`Chr2:49424650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,B13
`Chr2:49424716`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr2:49424843`	`AT`	`A`	1bp_deletion	frameshift_variant	11	B105,B30,B34,B42,B43,B68,B70,C26,C37,C57,C7
`Chr2:49425780`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	A10,B11,B34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795823.1

468 aa

234

468

AMP-binding

PF00501 AMP-binding 10-386 aa

XP_057795824.1

468 aa

234

468

AMP-binding

PF00501 AMP-binding 10-386 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795823.1`	Pfam	`PF00501`	AMP-binding	Family	10	386	1.8e-74	251.6	AMP-binding enzyme
`XP_057795824.1`	Pfam	`PF00501`	AMP-binding	Family	10	386	1.8e-74	251.6	AMP-binding enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939840.1
GAAAACGCAAGCTTTCCCCTTCACGAAATCAAGGACCCGTCACCAAAGATTCAAGATTGAAGAAGCCCACGTAGCCGTCGGCAAGAATGGAGTGGGACGCCATGTACTATTAAAATACTTAAATGATATTTTCCTTAATATTCAGACCACCTAATTAGATGGGCGTATTTAAGACAACCAACCACATGGTCCGATTGAGCGCCAGCTCTTGCCCTTGCTCTGCCTAATCACCTGTCCGATTCTTGCATTCTTTGACTTCT...

XM_057939841.1
ATAGTGGATGACATTTGATCAGTGATAGTTGTGCCTCAAAAGCATAATTGAGAATTGAGAGGATTATTTCATTCTTGATTGTTTCAGCCCTTTTTGTGTTGTGGGATTTTGTTTCTCTGGTTGAGGGAGTTGAGATAGGTGCTGCTTGGAGTTGCAAGGGATTTCAGATATAGATACACGTAATAGTATAGTCATGGAGCTGGTCAAGAAAGTTTCCCATAGAGGATCTACAGCTCCAGATAGTATTGCAATAAGATCTG...

CDS

2 records

下载 CDS FASTA

LOC131011936
ATGGAGCTGGTCAAGAAAGTTTCCCATAGAGGATCTACAGCTCCAGATAGTATTGCAATAAGATCTGATCAAAAAAGCCATACTTATCATCAGCTGGTTGAATCTGCTAAGAACATATCTAACTTGTTATCCAGTGCTGATTTAAAAACTGTCAATAGCCCTGGGAAAAACAACCATTTTGCTGGAGCTAGGGTTGGAATTGTTGCTAAACCTTCTCCCGAGTTTGTTGCTGGAGTGCTTGGAACATGGTTCAGTGGAGG...

Protein

2 records

下载 Protein FASTA

XP_057795823.1
MELVKKVSHRGSTAPDSIAIRSDQKSHTYHQLVESAKNISNLLSSADLKTVNSPGKNNHFAGARVGIVAKPSPEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDADITMILSTEDHHELMKAVAAKTSSQLSLLPPVSSTGVDRTNSQETEVSQAISGDDPALIIYTSGTTGKPKGVVHTHEGILAQVQMLSDAWGYTSDDQFLHCLPLHHVHGLFNALLAPLYAGSLVEFMPKFSVRGIWQRWRESHPDDQTKAED...

XP_057795824.1
MELVKKVSHRGSTAPDSIAIRSDQKSHTYHQLVESAKNISNLLSSADLKTVNSPGKNNHFAGARVGIVAKPSPEFVAGVLGTWFSGGVAVPLALSYPEAELLHVMNDADITMILSTEDHHELMKAVAAKTSSQLSLLPPVSSTGVDRTNSQETEVSQAISGDDPALIIYTSGTTGKPKGVVHTHEGILAQVQMLSDAWGYTSDDQFLHCLPLHHVHGLFNALLAPLYAGSLVEFMPKFSVRGIWQRWRESHPDDQTKAED...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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