Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002929`

染色体: Chr02 坐标: 49751374-49755603 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002929`
名称	SmilChr02G002929
描述	phosphatidylinositol 4-phosphate 5-kinase 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	49751374 - 49755603 / `+`

ID 对照

NCBI Gene ID	`LOC131011951`
GeneID	`131011951`
locus_tag	`-`
NCBI Name	`LOC131011951`
原始查询	`LOC131011951`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphatidylinositol 4-phosphate 5-kinase 1-like
产物	phosphatidylinositol 4-phosphate 5-kinase 1-like
Arabidopsis	`AT1G77740` (PIP5K2) phosphatidylinositol-4-phosphate 5-kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:844110] identity=71.3; qcov=0.943; evalue=0; confidence=high
Rice	`Os03g0705300` - identity=62.4; qcov=0.938; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity); GO:0046488 (phosphatidylinositol metabolic process)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01504 (PIP5K); PF02493 (MORN)
InterPro	-
eggNOG	-
NR	GeneID:131011951

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057795834.1`
2	Cytosol	细胞质基质	0.40000	`XP_057795834.1`
3	Cytoplasm	细胞质	0.20000	`XP_057795834.1`
4	Nucleus	细胞核	0.00000	`XP_057795834.1`
5	Chromosome	染色体	0.00000	`XP_057795834.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:49752085`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr2:49752204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr2:49752319`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B132,B45,B46,B83,B94
`Chr2:49752415`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr2:49752765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:49752769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:49752786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr2:49752976`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:49753380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr2:49753415`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A5,B124,B27,C25
`Chr2:49754187`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B30,B34,C37,C74,D11
`Chr2:49754238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795834.1

790 aa

395

790

MORN

PIP5K

PF02493 MORN 93-115 aa PF02493 MORN 116-137 aa PF02493 MORN 139-161 aa PF02493 MORN 162-183 aa PF02493 MORN 185-206 aa PF02493 MORN 208-230 aa PF02493 MORN 231-252 aa PF01504 PIP5K 474-784 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795834.1`	Pfam	`PF02493`	MORN	Repeat	93	115	1.2e-47	157.7	MORN repeat
`XP_057795834.1`	Pfam	`PF02493`	MORN	Repeat	116	137	1.2e-47	157.7	MORN repeat
`XP_057795834.1`	Pfam	`PF02493`	MORN	Repeat	139	161	1.2e-47	157.7	MORN repeat
`XP_057795834.1`	Pfam	`PF02493`	MORN	Repeat	162	183	1.2e-47	157.7	MORN repeat
`XP_057795834.1`	Pfam	`PF02493`	MORN	Repeat	185	206	1.2e-47	157.7	MORN repeat
`XP_057795834.1`	Pfam	`PF02493`	MORN	Repeat	208	230	1.2e-47	157.7	MORN repeat
`XP_057795834.1`	Pfam	`PF02493`	MORN	Repeat	231	252	1.2e-47	157.7	MORN repeat
`XP_057795834.1`	Pfam	`PF01504`	PIP5K	Family	474	784	6.5e-102	341.4	Phosphatidylinositol-4-phosphate 5-Kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939851.1
TTCAGTGTTGTATGTATAGGCGTTTCTCCCAAGGCCAGCTGAAACAATGCTATAATCTCTTTACCACAAATGCGACGCCGGCTAATTTAATTGCTCCCCCTCTCTCTCACACATCTCACACACTAATTCATTTTCTCTCTCTTCTTTTCTTTTTCTTTAAATTAGCAATACCAATATTATATTTCTATTTTATTTTGTCCAGATTGCTTTTTTCTGAGTCCCTTGTTTATTGATTGATTTCAGTTTCATCTCTCGATACA...

CDS

1 records

下载 CDS FASTA

LOC131011951
ATGCCATTGACGGAAAAAGGGGGGAAAATGCCGGAGCCACAGCCGCTGCCGGAAATCACAGTGAAGAAGGTTCAACCAACCGACGACAATCTAGAGAGAGAAAATCAGAAATCGATAGACAGCGCCGCTACCACAACCACCACCACGACGCCGAGGTCAGTAATCATCATTCCGCGGAGCAAGTCGCAGGCGGCGAGCCGGCGCGTCGCTCCGACCTCGATTTCCGATGCCAGCTCAGCTAGGGTTATGGAGAAGCGGCT...

Protein

1 records

下载 Protein FASTA

XP_057795834.1
MPLTEKGGKMPEPQPLPEITVKKVQPTDDNLERENQKSIDSAATTTTTTTPRSVIIIPRSKSQAASRRVAPTSISDASSARVMEKRLPNGDLYIGTFSNNTPHGSGKYLWEDGCMYEGEWKKGKASGKGKFSWPSGATFEGEFKSGRMEGTGTFIGPDGDMYRGSWSGDRKHGYGIKHYSNGDYYEGQWKRNLQDGQGRYLWSNGNEYIGEWKNGIIHGRGVLVWNNRNRFDGNWENGVPKGQGVFTWPDGSCYIGSWAN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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