Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004974`

染色体: Chr01 坐标: 67822498-67823169 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004974`
名称	SmilChr01G004974
描述	uncharacterized SmilChr01G004974
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	67822498 - 67823169 / `+`

ID 对照

NCBI Gene ID	`LOC131011979`
GeneID	`131011979`
locus_tag	`-`
NCBI Name	`LOC131011979`
原始查询	`LOC131011979`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Plant basic secretory protein (BSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816011]; symbol=AT2G15220; hit=AT2G15220; species=arabidopsis; confidence=high
产物	Plant basic secretory protein (BSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816011]; symbol=AT2G15220; hit=AT2G15220; species=arabidopsis; confidence=high
Arabidopsis	`AT2G15220` (AT2G15220) Plant basic secretory protein (BSP) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816011] identity=47.5; qcov=0.982; evalue=2.27e-71; confidence=high
Rice	`Os10g0490900` - identity=45.6; qcov=0.865; evalue=3.02e-60; confidence=high
GO	-
KEGG	-
Pfam	PF04450 (BSP)
InterPro	-
eggNOG	-
NR	GeneID:131011979

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.60000	`XP_057795870.1`
2	Vacuole	液泡	0.40000	`XP_057795870.1`
3	Nucleus	细胞核	0.00000	`XP_057795870.1`
4	Chromosome	染色体	0.00000	`XP_057795870.1`
5	Centromere	着丝粒	0.00000	`XP_057795870.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:67822555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr1:67822650`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr1:67822737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr1:67822788`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr1:67822853`	`A`	`AT`	1bp_insertion	frameshift_variant	6	A8,B122,B140,C14,C74,C85
`Chr1:67822893`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C37
`Chr1:67822893`	`GC`	`G`	1bp_deletion	CDS_variant	1	C37
`Chr1:67822922`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B109
`Chr1:67822922`	`AT`	`A`	1bp_deletion	CDS_variant	1	B109
`Chr1:67822996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A6,B3,B35,B84,C83
`Chr1:67823007`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795870.1

223 aa

112

223

BSP

PF04450 BSP 20-217 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795870.1`	Pfam	`PF04450`	BSP	Family	20	217	3e-56	191.2	Peptidase of plants and bacteria

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939887.1
ATGAAACCACAGCATCTCCTCCTCGTCGTCCTCCCATATTTGCCGGCCATCCTGGCCGTCAAATACGTGGCCATCAACGACGCGCAGAGCAGCCCGGGAGGGGCGAGGTTCGAGGCGGAGATCGGGATCCCCTACACATTAGAGATCATGAAGGACATCAACTACTTCATTTGGGACATTTTTCAACAATATAACGAATCGGAGAGGAAGGCCGTGGAGCTCGTGAAGGTGTTCATCCAGCAATACGACGGCGCGGAGGC...

CDS

1 records

下载 CDS FASTA

LOC131011979
ATGAAACCACAGCATCTCCTCCTCGTCGTCCTCCCATATTTGCCGGCCATCCTGGCCGTCAAATACGTGGCCATCAACGACGCGCAGAGCAGCCCGGGAGGGGCGAGGTTCGAGGCGGAGATCGGGATCCCCTACACATTAGAGATCATGAAGGACATCAACTACTTCATTTGGGACATTTTTCAACAATATAACGAATCGGAGAGGAAGGCCGTGGAGCTCGTGAAGGTGTTCATCCAGCAATACGACGGCGCGGAGGC...

Protein

1 records

下载 Protein FASTA

XP_057795870.1
MKPQHLLLVVLPYLPAILAVKYVAINDAQSSPGGARFEAEIGIPYTLEIMKDINYFIWDIFQQYNESERKAVELVKVFIQQYDGAEAITYGENVNVSALYLQGYQGNLKWEYTSLLHHELTHVFQWNGEGQAPVGLVEGMADYMILKSNYYPPAFAKAGTGDRWDQGYDFTARFLEYCEELRSGFVAELNKKMRHSFSEDLFVELMGKPLPQLWAEYKAKYAH

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器