Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001775`

染色体: Chr02 坐标: 32530113-32535470 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001775`
名称	SmilChr02G001775
描述	uncharacterized SmilChr02G001775
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	32530113 - 32535470 / `+`

ID 对照

NCBI Gene ID	`LOC131012025`
GeneID	`131012025`
locus_tag	`-`
NCBI Name	`LOC131012025`
原始查询	`LOC131012025`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TAF RNA polymerase I subunit A [Source:NCBI gene (formerly Entrezgene);Acc:841754]; symbol=AT1G53200; hit=AT1G53200; species=arabidopsis; confidence=low
产物	TAF RNA polymerase I subunit A [Source:NCBI gene (formerly Entrezgene);Acc:841754]; symbol=AT1G53200; hit=AT1G53200; species=arabidopsis; confidence=low
Arabidopsis	`AT1G53200` (AT1G53200) TAF RNA polymerase I subunit A [Source:NCBI gene (formerly Entrezgene);Acc:841754] identity=33.1; qcov=0.936; evalue=3e-83; confidence=low
Rice	`Os06g0244100` (P0412C04.14-2) - identity=33.2; qcov=0.892; evalue=2.25e-74; confidence=low
GO	GO:0000120 (RNA polymerase I transcription regulator complex); GO:0005515 (protein binding); GO:0006360 (transcription by RNA polymerase I)
KEGG	-
Pfam	PF14929 (TAF1_subA)
InterPro	-
eggNOG	-
NR	GeneID:131012025

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795913.1`
2	Chromosome	染色体	0.00000	`XP_057795913.1`
3	Centromere	着丝粒	0.00000	`XP_057795913.1`
4	Chromatin	染色质	0.00000	`XP_057795913.1`
5	Telomere	端粒	0.00000	`XP_057795913.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:32530414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B24,B52,C59,D11
`Chr2:32530468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr2:32530618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B24,B52,D11
`Chr2:32530633`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr2:32531405`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B135,B98
`Chr2:32531724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr2:32531749`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,B52
`Chr2:32531864`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:32531869`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:32531992`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B26,B29,B97,C52
`Chr2:32533340`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:32534813`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,B21,C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795913.1

656 aa

328

656

TAF1_subA

PF14929 TAF1_subA 89-624 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795913.1`	Pfam	`PF14929`	TAF1_subA	Repeat	89	624	5.1e-71	240.6	TAF RNA Polymerase I subunit A

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939930.1
TCCAGTGACAGTGAGGCATAATTTTGAAGAATTTACAAACTTTTGTTCGACTCAAAAGTAATCAAAACAGTCTCCTGTCGATGAAAATTTAATCTTGTTTAATGTTGTATCAAAGATTTGCTCTTTTTTAGTGGCAGTTTATGGCGAATTGAATTAGGATTGAATATTGAGGTTTCTTAACCTAGACTACACAAACCAGGATTTTCCCGCCGCCGCACATGGCGGAAGAGCCTGAACTAGAACTAGAAAGCCAGGTCGCC...

CDS

1 records

下载 CDS FASTA

LOC131012025
ATGGCGGAAGAGCCTGAACTAGAACTAGAAAGCCAGGTCGCCGCAACGCGGACGAAAATCAACCGGAAAACGCCCAAGAGACTCCGCGAGTTCGAAGGGTGCCGCGCCGCCGATCCTGCGCCGCCAACAAAGAGATTCAAAGGAGCACTATTGGCAGTCCACAAGCCGAGCCACTGCCTGAAGACGGGAGTCGGGAGCTTTCAATGTGGCGGCGGAAGCCTCCGGTTTCAGCACCGGACGCGGCTGTTCCGGCTCCTCAA...

Protein

1 records

下载 Protein FASTA

XP_057795913.1
MAEEPELELESQVAATRTKINRKTPKRLREFEGCRAADPAPPTKRFKGALLAVHKPSHCLKTGVGSFQCGGGSLRFQHRTRLFRLLNQLLSRHNWVEASGVLSVLIQGTIKDRSLSGNRAKYTATLELLSVINGENLRSRRIQSVYDLWMRKNGSLKSWSTKHKFAVQLELILTCLQRGSMKDAHQAALCLKQERGFDGDPVANLVVGLTFCQLWYSGLPKELQLTELDSSGSYLQWEIPTNDIHMPFEYSKEDNPHEAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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