当前解析结果
SmilChr02G001776| 统一新 Gene ID | SmilChr02G001776 |
|---|---|
| 名称 | SmilChr02G001776 |
| 描述 | ras-related protein Rab11B |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 32536172 - 32538199 / + |
| NCBI Gene ID | LOC131012027 |
|---|---|
| GeneID | 131012027 |
| locus_tag | - |
| NCBI Name | LOC131012027 |
| 原始查询 | LOC131012027 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ras-related protein Rab11B |
| 产物 | ras-related protein Rab11B |
| Arabidopsis | AT5G60860 (RABA1f)RAB GTPase homolog A1F [Source:NCBI gene (formerly Entrezgene);Acc:836207] identity=90.2; qcov=0.995; evalue=9.46e-145; confidence=high |
| Rice | Os05g0564400 (OsRab11C3)- identity=87.8; qcov=0.991; evalue=1.52e-142; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005768 (endosome) |
| KEGG | smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF08477 (Roc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012027 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasmic vesicle | 细胞质囊泡 | 1.00000 | XP_057795921.1 |
| 2 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057795921.1 |
| 3 | Trans-golgi network | Trans-golgi network | 1.00000 | XP_057795921.1 |
| 4 | Vesicle | 囊泡 | 1.00000 | XP_057795921.1 |
| 5 | Endosome | 内体 | 1.00000 | XP_057795921.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:32537667 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B106,B46,B83,C13,C30 |
Chr2:32537724 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,B69 |
Chr2:32537725 |
GCC |
G |
2bp_deletion | frameshift_variant | 6 | B138,B28,B32,C29,C34,D7 |
Chr2:32537730 |
T |
TA |
1bp_insertion | frameshift_variant | 6 | B138,B28,B32,C29,C34,D7 |
Chr2:32537775 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B138,B28,B32,C34,D7 |
Chr2:32537790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B28,B32,D7 |
Chr2:32537796 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B138,B28,B32,D7 |
Chr2:32537801 |
C |
CA |
1bp_insertion | frameshift_variant | 3 | B138,B28,B32 |
Chr2:32537801 |
C |
CA |
1bp_insertion | CDS_variant | 3 | B138,B28,B32 |
Chr2:32537803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B138,B28,B32 |
Chr2:32537805 |
GGC |
G |
2bp_deletion | frameshift_variant | 3 | B138,B28,B32 |
Chr2:32537805 |
GGC |
G |
2bp_deletion | CDS_variant | 3 | B138,B28,B32 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795921.1PF00025
Arf 15-144 aa
PF08477
Roc 16-130 aa
PF00071
Ras 16-176 aa
PF01926
MMR_HSR1 17-122 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795921.1 |
Pfam | PF00025 |
Arf | Domain | 15 | 144 | 4.7e-12 | 46.5 | ADP-ribosylation factor family |
XP_057795921.1 |
Pfam | PF08477 |
Roc | Domain | 16 | 130 | 2.4e-35 | 122.1 | Ras of Complex, Roc, domain of DAPkinase |
XP_057795921.1 |
Pfam | PF00071 |
Ras | Domain | 16 | 176 | 4.9e-64 | 215.5 | Ras family |
XP_057795921.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 17 | 122 | 1.3e-06 | 29.2 | 50S ribosome-binding GTPase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。