Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005017`

染色体: Chr01 坐标: 68167299-68169868 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005017`
名称	SmilChr01G005017
描述	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	68167299 - 68169868 / `-`

ID 对照

NCBI Gene ID	`LOC131012042`
GeneID	`131012042`
locus_tag	`-`
NCBI Name	`LOC131012042`
原始查询	`LOC131012042`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like
产物	4-hydroxy-3-methylbut-2-enyl diphosphate reductase%2C chloroplastic-like
Arabidopsis	`AT4G34350` (HDR) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Source:NCBI gene (formerly Entrezgene);Acc:829585] identity=69.4; qcov=0.976; evalue=0; confidence=high
Rice	`Os03g0731900` (OsHDR) - identity=71.5; qcov=0.976; evalue=0; confidence=high
GO	GO:0019288 (isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway); GO:0046872 (metal ion binding); GO:0050992 (dimethylallyl diphosphate biosynthetic process); GO:0051745 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase activity)
KEGG	smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF02401 (LYTB)
InterPro	-
eggNOG	-
NR	GeneID:131012042

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057795937.1`
2	Cytosol	细胞质基质	1.00000	`XP_057795937.1`
3	Nucleus	细胞核	0.00000	`XP_057795937.1`
4	Chromosome	染色体	0.00000	`XP_057795937.1`
5	Centromere	着丝粒	0.00000	`XP_057795937.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:68167754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr1:68167857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B135,B76,C26,C37
`Chr1:68167938`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,B26,C27,C30
`Chr1:68167960`	`C`	`CT`	1bp_insertion	stop_gained,frameshift_variant	4	A15,B26,C27,C30
`Chr1:68167960`	`C`	`CT`	1bp_insertion	CDS_variant	4	A15,B26,C27,C30
`Chr1:68167972`	`AC`	`A`	1bp_deletion	frameshift_variant	5	A10,B106,B122,B123,C38
`Chr1:68167972`	`AC`	`A`	1bp_deletion	CDS_variant	5	A10,B106,B122,B123,C38
`Chr1:68169103`	`AG`	`A`	1bp_deletion	frameshift_variant	1	D10
`Chr1:68169103`	`AG`	`A`	1bp_deletion	CDS_variant	1	D10
`Chr1:68169226`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,C57
`Chr1:68169314`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr1:68169432`	`C`	`T`	EMS_canonical_SNV	stop_gained	7	B100,B126,B140,B46,B56,B96,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795937.1

378 aa

189

378

LYTB

PF02401 LYTB 26-365 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795937.1`	Pfam	`PF02401`	LYTB	Family	26	365	2.4e-72	244.1	LytB protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057939954.1
ATGTCAGGTGATAATATTATGCAGAAATTGAAGGAGAATGGGAAAGAGTATAGATGGGGTGAGGTGACGTTGAAGCTGGGCGAAGCTTATGGATACTGCTGGGGTGTTGAGCGCACCGTTAGAATTGCTTACGAAGCTCGACACCAATTTCCCCATCGCAACATTTGGCTCACTAATGAAATCATTCACAACCCCACTGTTAATCAGACGCTGGGAGAGATGGGAGTGAACATTCTCCCAGTGAAGGAGGGGAAGAAACA...

CDS

1 records

下载 CDS FASTA

LOC131012042
ATGTCAGGTGATAATATTATGCAGAAATTGAAGGAGAATGGGAAAGAGTATAGATGGGGTGAGGTGACGTTGAAGCTGGGCGAAGCTTATGGATACTGCTGGGGTGTTGAGCGCACCGTTAGAATTGCTTACGAAGCTCGACACCAATTTCCCCATCGCAACATTTGGCTCACTAATGAAATCATTCACAACCCCACTGTTAATCAGACGCTGGGAGAGATGGGAGTGAACATTCTCCCAGTGAAGGAGGGGAAGAAACA...

Protein

1 records

下载 Protein FASTA

XP_057795937.1
MSGDNIMQKLKENGKEYRWGEVTLKLGEAYGYCWGVERTVRIAYEARHQFPHRNIWLTNEIIHNPTVNQTLGEMGVNILPVKEGKKQFDLVGKGDVVVLPAFGAPVQEMMLLTQKNVEIVDTTCPWVAKVWHSVEKHKKGEYTSIIHGKYAHEETVATASFAANYIVVKNVKEATYLCDYILGGALDGSSSTKQAFLQKFEFAVSKGFDPDKDLQRVGIANQTTMLKGETEEIGKLVENSMMRRYGVENINKHFISANTI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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