Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001792`

染色体: Chr02 坐标: 32680166-32682314 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001792`
名称	SmilChr02G001792
描述	uncharacterized SmilChr02G001792
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	32680166 - 32682314 / `+`

ID 对照

NCBI Gene ID	`LOC131012043`
GeneID	`131012043`
locus_tag	`-`
NCBI Name	`LOC131012043`
原始查询	`LOC131012043`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666]; symbol=AT3G29765; hit=AT3G29765; species=arabidopsis; confidence=high
产物	ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666]; symbol=AT3G29765; hit=AT3G29765; species=arabidopsis; confidence=high
Arabidopsis	`AT3G29765` (AT3G29765) ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666] identity=46.4; qcov=0.987; evalue=1.26e-96; confidence=high
Rice	`Os02g0301400` - identity=38.8; qcov=0.765; evalue=9.39e-50; confidence=medium
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT)
InterPro	-
eggNOG	-
NR	GeneID:131012043

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057795935.1`
2	Cytoplasm	细胞质	0.40000	`XP_057795935.1`
3	Chromosome	染色体	0.00000	`XP_057795935.1`
4	Centromere	着丝粒	0.00000	`XP_057795935.1`
5	Chromatin	染色质	0.00000	`XP_057795935.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:32680750`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr2:32680760`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr2:32680773`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B51,C62
`Chr2:32680854`	`GC`	`G`	1bp_deletion	frameshift_variant	8	A18,B104,B108,B24,B33,B96,C65,D4
`Chr2:32680862`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B24,B46,C85
`Chr2:32680881`	`TC`	`T`	1bp_deletion	frameshift_variant	29	A15,A21,A4,A7,B114,B115,B118,B12,B121,B123,B127,B15,B23,B32,B50,B54,B67,B89,B93,C26,C27,C36,C37,C47,C48,C49,C50,C6,C74
`Chr2:32680884`	`AT`	`A`	1bp_deletion	frameshift_variant	29	A15,A21,A4,A7,B114,B115,B118,B12,B121,B123,B127,B15,B23,B32,B50,B54,B67,B89,B93,C26,C27,C36,C37,C47,C48,C49,C50,C6,C74
`Chr2:32680900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B82,B89,C20,C76
`Chr2:32680906`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:32680965`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B121,C44,D2
`Chr2:32680971`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr2:32680985`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795935.1

444 aa

222

444

Dimer_Tnp_hAT

PF05699 Dimer_Tnp_hAT 345-404 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057795935.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	345	404	3.2e-06	27.5	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057939952.1
AAGACATAGTGTGGCAAATATGTTTAGATCAAATGCTCGTGAGTTGGATGTTGCTTATCGCACTCGTTTGACGGCTTCATTGGATGTGACTCGTTTTCTATTGAAGCAAGGATTGCCTTTTCGTGGATATGATGAGTCGACTACTTCTTTAAATCGAGGTAATTTTCTTGAGTTGCTTCAATGGCATAGTGATCATAATGATGTTGTTTCCAAAGTTTTGGGTTCAAATGCTCCTGGTAATAATCAAATGAATTCCCCAC...

XM_057939953.1
AAGACATAGTGTGGCAAATATGTTTAGATCAAATGCTCGTGAGTTGGATGTTGCTTATCGCACTCGTTTGACGGCTTCATTGGATGTGACTCGTTTTCTATTGAAGCAAGGATTGCCTTTTCGTGGATATGATGAGTCGACTACTTCTTTAAATCGAGGTAATTTTCTTGAGTTGCTTCAATGGCATAGTGATCATAATGATGTTGTTTCCAAAGTTTTGGGTTCAAATGCTCCTGGTAATAATCAAATGAATTCCCCAC...

CDS

2 records

下载 CDS FASTA

LOC131012043
ATGAGAGGTGAGTTCAATGGGTTGAAAGCCTTAATATTGGAAGAAAATCCTTATGCTATGTACATTCATTGCTTTTCACATCAACTTCAGTTAATTGTTGTTGCTGTTGCTAAGAGTAACATGGCTGTGAAGGACTTTTTTAGCTATGTTTCCATGATAGTGAATACGACTGGAGCATCTTGCAAAAGAAAAGATCAACTTAGACAGTTAGAACATGAGAGATTGGTTAAAGAACTCAATGATGAAGTAAGGATGACTGG...

Protein

2 records

下载 Protein FASTA

XP_057795935.1
MRGEFNGLKALILEENPYAMYIHCFSHQLQLIVVAVAKSNMAVKDFFSYVSMIVNTTGASCKRKDQLRQLEHERLVKELNDEVRMTGRGLNQETSLARPGDTRWGSHYFTLLRLCAMWPSVEKVLENIRDDTTSSEVRSTTRGLLGKMNNYEFVFVMHLMKYLLGMTNELSFALQIKDQNIVQAMSLIDTVKAQLHDFRNTGWEIVCDEVNSFCEVNAISLIDMEDTITRPGYKRQSITNDHYYRVEIFTEVVDLIIQEM...

XP_057795936.1
MRGEFNGLKALILEENPYAMYIHCFSHQLQLIVVAVAKSNMAVKDFFSYVSMIVNTTGASCKRKDQLRQLEHERLVKELNDEVRMTGRGLNQETSLARPGDTRWGSHYFTLLRLCAMWPSVEKVLENIRDDTTSSEVRSTTRGLLGKMNNYEFVFVMHLMKYLLGMTNELSFALQIKDQNIVQAMSLIDTVKAQLHDFRNTGWEIVCDEVNSFCEVNAISLIDMEDTITRPGYKRQSITNDHYYRVEIFTEVVDLIIQEM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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