当前解析结果
SmilChr02G001819| 统一新 Gene ID | SmilChr02G001819 |
|---|---|
| 名称 | SmilChr02G001819 |
| 描述 | dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 33060162 - 33064277 / - |
| NCBI Gene ID | LOC131012071 |
|---|---|
| GeneID | 131012071 |
| locus_tag | - |
| NCBI Name | LOC131012071 |
| 原始查询 | LOC131012071 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase |
| 产物 | dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1%2C2-mannosyltransferase |
| Arabidopsis | AT1G16900 (EBS3)Alg9-like mannosyltransferase family [Source:NCBI gene (formerly Entrezgene);Acc:838261] identity=72.1; qcov=0.996; evalue=0; confidence=high |
| Rice | Os01g0209000- identity=69.3; qcov=0.995; evalue=0; confidence=high |
| GO | GO:0000026 (alpha-1,2-mannosyltransferase activity); GO:0005789 (endoplasmic reticulum membrane); GO:0006487 (protein N-linked glycosylation) |
| KEGG | smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03901 (Glyco_transf_22) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012071 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057795963.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057795963.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057795963.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057795963.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057795963.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:33060796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr2:33061010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B118,B139,B72,B78 |
Chr2:33061037 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr2:33061079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,C37 |
Chr2:33061529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr2:33061706 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:33062122 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B34,B8,C72 |
Chr2:33062157 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:33062365 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,B118,B139,B72,B78 |
Chr2:33062667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B120,C32,C68,C81,D5 |
Chr2:33062672 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:33062971 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057795963.1PF03901
Glyco_transf_22 47-449 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795963.1 |
Pfam | PF03901 |
Glyco_transf_22 | Family | 47 | 449 | 6.4e-112 | 375.5 | Alg9-like mannosyltransferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。