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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G001832

染色体: Chr02 坐标: 33341002-33345584 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G001832
名称SmilChr02G001832
描述uncharacterized SmilChr02G001832
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向33341002 - 33345584 / +

ID 对照

NCBI Gene IDLOC131012082
GeneID131012082
locus_tag-
NCBI NameLOC131012082
原始查询LOC131012082

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844216]; symbol=AT1G78800; hit=AT1G78800; species=arabidopsis; confidence=high
产物UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844216]; symbol=AT1G78800; hit=AT1G78800; species=arabidopsis; confidence=high
ArabidopsisAT1G78800 (AT1G78800)
UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844216]
identity=74.8; qcov=1; evalue=0; confidence=high
RiceOs04g0589600
-
identity=71.8; qcov=0.983; evalue=0; confidence=high
GOGO:0000033 (alpha-1,3-mannosyltransferase activity); GO:0004378 (GDP-Man:Man(1)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity); GO:0006486 (GO:0006486); GO:0006490 (GO:0006490)
KEGGsmil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
PfamPF00534 (Glycos_transf_1); PF13439 (Glyco_transf_4); PF13692 (Glyco_trans_1_4); PF20706 (GT4-conflict)
InterPro-
eggNOG-
NRGeneID:131012082

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057795974.1
2 Endoplasmic reticulum membrane 内质网膜 0.80000 XP_057795974.1
3 Nucleus 细胞核 0.00000 XP_057795974.1
4 Chromosome 染色体 0.00000 XP_057795974.1
5 Centromere 着丝粒 0.00000 XP_057795974.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:33343024 G A EMS_canonical_SNV CDS_variant 1 B75
Chr2:33343099 C T EMS_canonical_SNV CDS_variant 1 B75
Chr2:33343109 C T EMS_canonical_SNV CDS_variant 1 B75
Chr2:33343111 C T EMS_canonical_SNV CDS_variant 1 B75
Chr2:33343312 C T EMS_canonical_SNV CDS_variant 1 B75
Chr2:33343561 G A EMS_canonical_SNV CDS_variant 1 B75
Chr2:33343573 G A EMS_canonical_SNV CDS_variant 1 B75
Chr2:33343597 G A EMS_canonical_SNV CDS_variant 1 B75
Chr2:33343601 C T EMS_canonical_SNV CDS_variant 1 B75
Chr2:33343631 G A EMS_canonical_SNV CDS_variant 1 B75
Chr2:33344155 C T EMS_canonical_SNV CDS_variant 2 B75,C82
Chr2:33344201 G A EMS_canonical_SNV CDS_variant 1 B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057795974.1
408 aa
N
1
204
408
Glyco_transf_4
GT4-conflict
Glycos_transf_1
Glyco_trans_1_4
C
PF13439 Glyco_transf_4 20-200 aa PF20706 GT4-conflict 186-343 aa PF00534 Glycos_transf_1 207-380 aa PF13692 Glyco_trans_1_4 211-367 aa
XP_057795975.1
408 aa
N
1
204
408
Glyco_transf_4
GT4-conflict
Glycos_transf_1
Glyco_trans_1_4
C
PF13439 Glyco_transf_4 20-200 aa PF20706 GT4-conflict 186-343 aa PF00534 Glycos_transf_1 207-380 aa PF13692 Glyco_trans_1_4 211-367 aa
XP_057795976.1
408 aa
N
1
204
408
Glyco_transf_4
GT4-conflict
Glycos_transf_1
Glyco_trans_1_4
C
PF13439 Glyco_transf_4 20-200 aa PF20706 GT4-conflict 186-343 aa PF00534 Glycos_transf_1 207-380 aa PF13692 Glyco_trans_1_4 211-367 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057795974.1 Pfam PF13439 Glyco_transf_4 Domain 20 200 3.3e-13 50.7 Glycosyltransferase Family 4
XP_057795974.1 Pfam PF20706 GT4-conflict Family 186 343 1.2e-07 31.7 Family 4 Glycosyltransferase in conflict systems
XP_057795974.1 Pfam PF00534 Glycos_transf_1 Domain 207 380 5.8e-34 117.8 Glycosyl transferases group 1
XP_057795974.1 Pfam PF13692 Glyco_trans_1_4 Domain 211 367 2e-18 67.8 Glycosyl transferases group 1
XP_057795975.1 Pfam PF13439 Glyco_transf_4 Domain 20 200 3.3e-13 50.7 Glycosyltransferase Family 4
XP_057795975.1 Pfam PF20706 GT4-conflict Family 186 343 1.2e-07 31.7 Family 4 Glycosyltransferase in conflict systems
XP_057795975.1 Pfam PF00534 Glycos_transf_1 Domain 207 380 5.8e-34 117.8 Glycosyl transferases group 1
XP_057795975.1 Pfam PF13692 Glyco_trans_1_4 Domain 211 367 2e-18 67.8 Glycosyl transferases group 1
XP_057795976.1 Pfam PF13439 Glyco_transf_4 Domain 20 200 3.3e-13 50.7 Glycosyltransferase Family 4
XP_057795976.1 Pfam PF20706 GT4-conflict Family 186 343 1.2e-07 31.7 Family 4 Glycosyltransferase in conflict systems
XP_057795976.1 Pfam PF00534 Glycos_transf_1 Domain 207 380 5.8e-34 117.8 Glycosyl transferases group 1
XP_057795976.1 Pfam PF13692 Glyco_trans_1_4 Domain 211 367 2e-18 67.8 Glycosyl transferases group 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057939992.1
GTACTATTAGAAAAACAAAATAGAAATTAGGAAATAGGTTTCTGATTTCTCTTTCTCGCCACCGTTCTCCGTCTCTCTCTCTGCCCTCTTCCGTTTCACTCTCTCTCGGTCTCTCTCTGCAACCGCCGGTCGCCGCCGCCCCCGCCTCCTCCGGTCGCCCGTGGCAACGGCCTCACCGCCTCGGACATCTCCGTCAAGCGCTGCGATTTGCAAGCGCCAAGCAGGCAGCACAGCAGCAGTGCGCCGCCCGGCCCTCGCCG...
XM_057939991.1
GTACTATTAGAAAAACAAAATAGAAATTAGGAAATAGGTTTCTGATTTCTCTTTCTCGCCACCGTTCTCCGTCTCTCTCTCTGCCCTCTTCCGTTTCACTCTCTCTCGGTCTCTCTCTGCAACCGCCGGTCGCCGCCGCCCCCGCCTCCTCCGGTCGCCCGTGGCAACGGCCTCACCGCCTCGGACATCTCCGTCAAGCGCTGCGATTTGCAAGCGCCAAGCAGGCAGCACAGCAGCAGTGCGCCGCCCGGCCCTCGCCG...

CDS

3 records

下载 CDS FASTA
LOC131012082
ATGGAGAATAAAGGCGGCTCAAAATTAAACATAGCGATTATCCACCCTGATCTTGGAATAGGTGGAGCGGAGAGGTTAATTGTTGACGCTGCTGTAGAACTCTCATCTAACGGTCACAATGTTCACATATTTACGTCACATCACGACAAAATGCGCTGTTTTGAGGAGACAATTTCTGGCATCTTTCCAGTCACTGTGTATGGAGCTTTTCTTCCCCGACATATTTTTTATCGTCTCCACGCAGTTTGTGCTTATCTCCG...
LOC131012082
ATGGAGAATAAAGGCGGCTCAAAATTAAACATAGCGATTATCCACCCTGATCTTGGAATAGGTGGAGCGGAGAGGTTAATTGTTGACGCTGCTGTAGAACTCTCATCTAACGGTCACAATGTTCACATATTTACGTCACATCACGACAAAATGCGCTGTTTTGAGGAGACAATTTCTGGCATCTTTCCAGTCACTGTGTATGGAGCTTTTCTTCCCCGACATATTTTTTATCGTCTCCACGCAGTTTGTGCTTATCTCCG...

Protein

3 records

下载 Protein FASTA
XP_057795974.1
MENKGGSKLNIAIIHPDLGIGGAERLIVDAAVELSSNGHNVHIFTSHHDKMRCFEETISGIFPVTVYGAFLPRHIFYRLHAVCAYLRCIFVALCVLFLYPSFDIILVDQVSVVIPLMKLKRLSKVVFYCHFPDLLLAQHSTILRRIYRKPIDFFEEMTTGMADLILVNSKFTASTFAKTFKQLSSRGVRPAVLYPAVNVDQFDKPSATKLTFLSINRFERKKNIELAISAFAMLYNSQQEFLQGDDRKELSLVVAGGFDK...
XP_057795975.1
MENKGGSKLNIAIIHPDLGIGGAERLIVDAAVELSSNGHNVHIFTSHHDKMRCFEETISGIFPVTVYGAFLPRHIFYRLHAVCAYLRCIFVALCVLFLYPSFDIILVDQVSVVIPLMKLKRLSKVVFYCHFPDLLLAQHSTILRRIYRKPIDFFEEMTTGMADLILVNSKFTASTFAKTFKQLSSRGVRPAVLYPAVNVDQFDKPSATKLTFLSINRFERKKNIELAISAFAMLYNSQQEFLQGDDRKELSLVVAGGFDK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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