Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001879`

染色体: Chr02 坐标: 34103067-34110484 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001879`
名称	SmilChr02G001879
描述	uncharacterized SmilChr02G001879
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	34103067 - 34110484 / `+`

ID 对照

NCBI Gene ID	`LOC131012119`
GeneID	`131012119`
locus_tag	`-`
NCBI Name	`LOC131012119`
原始查询	`LOC131012119`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	IAP-like protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:838292]; symbol=ILP1; hit=AT1G17210; species=arabidopsis; confidence=high
产物	IAP-like protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:838292]; symbol=ILP1; hit=AT1G17210; species=arabidopsis; confidence=high
Arabidopsis	`AT1G17210` (ILP1) IAP-like protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:838292] identity=59.2; qcov=0.919; evalue=0; confidence=high
Rice	`Os03g0785300` - identity=56; qcov=0.975; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF07967 (zf-C3HC); PF08600 (NuBaID_C)
InterPro	-
eggNOG	-
NR	GeneID:131012119

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796012.1`
2	Chromosome	染色体	0.00000	`XP_057796012.1`
3	Centromere	着丝粒	0.00000	`XP_057796012.1`
4	Chromatin	染色质	0.00000	`XP_057796012.1`
5	Telomere	端粒	0.00000	`XP_057796012.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:34103250`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,C72
`Chr2:34103281`	`CCG`	`C`	2bp_deletion	frameshift_variant	1	B53
`Chr2:34103281`	`CCG`	`C`	2bp_deletion	CDS_variant	1	B53
`Chr2:34104021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr2:34104159`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr2:34104994`	`CT`	`C`	1bp_deletion	frameshift_variant	1	C48
`Chr2:34104994`	`CT`	`C`	1bp_deletion	CDS_variant	1	C48
`Chr2:34104996`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C48
`Chr2:34104996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:34105040`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr2:34106428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B129,B30,B55,B56,C37
`Chr2:34106712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796012.1

975 aa

488

975

zf-C3HC

NuBaID_C

PF07967 zf-C3HC 90-214 aa PF08600 NuBaID_C 867-917 aa

XP_057796013.1

964 aa

482

964

zf-C3HC

NuBaID_C

PF07967 zf-C3HC 90-214 aa PF08600 NuBaID_C 867-917 aa

XP_057796014.1

952 aa

476

952

zf-C3HC

NuBaID_C

PF07967 zf-C3HC 90-214 aa PF08600 NuBaID_C 867-917 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796012.1`	Pfam	`PF07967`	zf-C3HC	Domain	90	214	2e-34	119.2	NuBaID N-terminal domain (aka zf-C3HC)
`XP_057796012.1`	Pfam	`PF08600`	NuBaID_C	Domain	867	917	1.9e-07	31.8	NuBaID, C-terminal domain
`XP_057796013.1`	Pfam	`PF07967`	zf-C3HC	Domain	90	214	2e-34	119.2	NuBaID N-terminal domain (aka zf-C3HC)
`XP_057796013.1`	Pfam	`PF08600`	NuBaID_C	Domain	867	917	1.9e-07	31.9	NuBaID, C-terminal domain
`XP_057796014.1`	Pfam	`PF07967`	zf-C3HC	Domain	90	214	2e-34	119.2	NuBaID N-terminal domain (aka zf-C3HC)
`XP_057796014.1`	Pfam	`PF08600`	NuBaID_C	Domain	867	917	1.8e-07	31.9	NuBaID, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057940029.1
TTCCCATTTTTGTTTTCAATTTCAATTAGCAAAAGGAATCTCGCTCACAGCGAGAGAGAGTTGGAGAGAGTGTGAGTGAGAGGGAAAGACTACACACAAACATATTATATATATTTAGAGGGAGAGATAGAGAGAGCGAGAGCGAGGGATGAAGGACGAAGCCGTGAGCTCCTCACGCGACCCGTTATTGCCCCCGAGATCTACGTCTCCTCCTCCGAGCCTCACTCACGCTGCCAGTTCTGCTGGGGCATCATCTCCTG...

XM_057940031.1
TTTTTGTTTTCAATTTCAATTAGCAAAAGGAATCTCGCTCACAGCGAGAGAGAGTTGGAGAGAGTGTGAGTGAGAGGGAAAGACTACACACAAACATATTATATATATTTAGAGGGAGAGATAGAGAGAGCGAGAGCGAGGGATGAAGGACGAAGCCGTGAGCTCCTCACGCGACCCGTTATTGCCCCCGAGATCTACGTCTCCTCCTCCGAGCCTCACTCACGCTGCCAGTTCTGCTGGGGCATCATCTCCTGCTGTTC...

CDS

3 records

下载 CDS FASTA

LOC131012119
ATGAAGGACGAAGCCGTGAGCTCCTCACGCGACCCGTTATTGCCCCCGAGATCTACGTCTCCTCCTCCGAGCCTCACTCACGCTGCCAGTTCTGCTGGGGCATCATCTCCTGCTGTTCCCACAAATGCTGGCAGCTCAGATGGGCTTGGTCAAGTCCAGAATTCGAAAGGAGGGTCTCTTTCCCGGATTGGTTCACAGCCCATGCACACATCATTGAGCACCAGTGCTGGTGGTTCAGCCCTTGGATCATCACAGCCTTC...

Protein

3 records

下载 Protein FASTA

XP_057796012.1
MKDEAVSSSRDPLLPPRSTSPPPSLTHAASSAGASSPAVPTNAGSSDGLGQVQNSKGGSLSRIGSQPMHTSLSTSAGGSALGSSQPSCRPWERGDLLRRLSTFKPANWFRKPKAASSLACARKGWVNVDVDTVECESCGAILKFVSSATWTPSEADGAGEEFSKKLDEGHRLTCPWTGNCCAESLVQFPPTPPSALIGGYKDRCDGLLQFPSLPVVAASAIEQIRISRGSEIDRLLAQSQLARNESGIKLEIFLGTENSR...

XP_057796013.1
MKDEAVSSSRDPLLPPRSTSPPPSLTHAASSAGASSPAVPTNAGSSDGLGQVQNSKGGSLSRIGSQPMHTSLSTSAGGSALGSSQPSCRPWERGDLLRRLSTFKPANWFRKPKAASSLACARKGWVNVDVDTVECESCGAILKFVSSATWTPSEADGAGEEFSKKLDEGHRLTCPWTGNCCAESLVQFPPTPPSALIGGYKDRCDGLLQFPSLPVVAASAIEQIRISRGSEIDRLLAQSQLARNESGIKLEIFLGTENSR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器