Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001890`

染色体: Chr02 坐标: 34191061-34193024 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001890`
名称	SmilChr02G001890
描述	cytochrome P450 72A552-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	34191061 - 34193024 / `+`

ID 对照

NCBI Gene ID	`LOC131012128`
GeneID	`131012128`
locus_tag	`-`
NCBI Name	`LOC131012128`
原始查询	`LOC131012128`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cytochrome P450 72A552-like
产物	cytochrome P450 72A552-like
Arabidopsis	`AT3G14640` (CYP72A10) cytochrome P450, family 72, subfamily A, polypeptide 10 [Source:NCBI gene (formerly Entrezgene);Acc:820692] identity=48.6; qcov=0.986; evalue=4.22e-147; confidence=high
Rice	`Os01g0627800` - identity=48; qcov=0.993; evalue=3.33e-137; confidence=high
GO	GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding)
KEGG	-
Pfam	PF00067 (p450)
InterPro	-
eggNOG	-
NR	GeneID:131012128

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057796020.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057796020.1`
3	Nucleus	细胞核	0.00000	`XP_057796020.1`
4	Chromosome	染色体	0.00000	`XP_057796020.1`
5	Centromere	着丝粒	0.00000	`XP_057796020.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:34191103`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:34191155`	`A`	`AAT`	2bp_insertion	frameshift_variant	45	A11,A15,A19,A4,B111,B118,B119,B121,B124,B125,B134,B17,B22,B28,B40,B41,B42,B43,B58,B61,B66,B74,B75,B76,B80,B93,B99,C10,C18,C2,C20,C25,C31,C4,C46,C50,C51,C55,C56,C65,C71,C72,C79,C80,C87
`Chr2:34191171`	`G`	`GC`	1bp_insertion	frameshift_variant	34	A13,A20,A3,A6,A8,B100,B101,B108,B110,B121,B18,B19,B22,B25,B37,B5,B52,B60,B63,B64,B81,B86,B9,B99,C10,C17,C26,C28,C3,C35,C41,C6,C75,C86
`Chr2:34191749`	`AG`	`A`	1bp_deletion	frameshift_variant	100	A11,A14,A16,A21,A22,A24,A25,A3,A5,A7,A8,B1,B10,B101,B102,B103,B106,B110,B113,B119,B120,B123,B128,B130,B132,B133,B134,B138,B16,B17,B20,B21,B24,B25,B27,B28,B29,B32,B37,B38,B39,B4,B40,B47,B49,B5,B52,B53,B54,B61,B7,B70,B71,B73,B75,B81,B85,B90,B92,B97,C11,C12,C13,C14,C17,C18,C19,C20,C21,C22,C29,C35,C38,C4,C40,C42,C43,C46,C47,C53,C54,C57,C59,C63,C64,C66,C69,C7,C72,C76,C78,C8,C81,C9,D1,D11,D4,D5,D8,D9
`Chr2:34191775`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,B76
`Chr2:34192052`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr2:34192258`	`TGG`	`T`	2bp_deletion	frameshift_variant	45	A11,A15,A19,A4,B111,B118,B119,B121,B124,B125,B134,B17,B22,B28,B40,B41,B42,B43,B58,B61,B66,B74,B75,B76,B80,B93,B99,C10,C18,C2,C20,C25,C31,C4,C46,C50,C51,C55,C56,C65,C71,C72,C79,C80,C87
`Chr2:34192324`	`GT`	`G`	1bp_deletion	frameshift_variant	107	A14,A16,A18,A21,A22,A24,A25,A3,A5,A7,A8,B1,B10,B100,B101,B102,B106,B11,B110,B113,B114,B119,B120,B123,B125,B128,B130,B132,B134,B138,B16,B17,B20,B21,B24,B25,B27,B28,B29,B32,B34,B37,B38,B39,B4,B40,B46,B47,B49,B5,B50,B52,B53,B54,B6,B61,B7,B70,B71,B73,B74,B75,B78,B85,B9,B90,B92,B97,C11,C12,C13,C14,C17,C18,C19,C20,C21,C22,C29,C35,C38,C4,C40,C42,C43,C46,C53,C54,C57,C59,C63,C64,C66,C69,C7,C72,C76,C78,C8,C81,C9,D1,D11,D4,D5,D8,D9
`Chr2:34192328`	`T`	`TCG`	2bp_insertion	frameshift_variant	4	B71,B89,C62,C85
`Chr2:34192328`	`T`	`TCG`	2bp_insertion	CDS_variant	4	B71,B89,C62,C85
`Chr2:34192446`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B80
`Chr2:34192446`	`AC`	`A`	1bp_deletion	CDS_variant	1	B80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796020.1

509 aa

254

509

p450

PF00067 p450 99-484 aa

XP_057796021.1

428 aa

214

428

p450

PF00067 p450 18-403 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796020.1`	Pfam	`PF00067`	p450	Domain	99	484	9.2e-72	243.0	Cytochrome P450
`XP_057796021.1`	Pfam	`PF00067`	p450	Domain	18	403	6.8e-72	243.4	Cytochrome P450

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940037.1
GTAGAATTCGAGTTGAAAAATGGAAGCCACATTTGGGTTAATCCTAAGCAGCATAGTTGTAGCAGCATCACTTACATGGGCTGCGAAGCTGCTAAATACGTTCTGGCTTCGCCCGAGAAAGATCGAGAAGCTTCTGAGAGAACAAGGTCTGGGCGGGAATCCTTACAGATTGATCGTGGGAGACATGACTGACTTTATGAAATCCATCAACGAAGAACAGCCTAAATCCATCGAAATCTCGGACGCGCATATGCCTCATG...

XM_057940038.1
AAAGATCGAGAAGCTTCTGAGAGAACAAGGTCTGGGCGGGAATCCTTACAGATTGATCGTGGGAGACATGACTGACTTTATGAAATCCATCAACGAAGAACAGCCTAAATCCATCGAAATCTCGGACGCGCATATGCCTCATGTTCTTGCATACGAGCATCGGATCATCTCCACGTGGTGGCAACTGTTTCTACTGGTTGGGTCCGTGGGCGCGGCTGGTGGTGACTGATCCGGAGCTCATAAAGGAGATAGTGCGGAGA...

CDS

2 records

下载 CDS FASTA

LOC131012128
ATGGAAGCCACATTTGGGTTAATCCTAAGCAGCATAGTTGTAGCAGCATCACTTACATGGGCTGCGAAGCTGCTAAATACGTTCTGGCTTCGCCCGAGAAAGATCGAGAAGCTTCTGAGAGAACAAGGTCTGGGCGGGAATCCTTACAGATTGATCGTGGGAGACATGACTGACTTTATGAAATCCATCAACGAAGAACAGCCTAAATCCATCGAAATCTCGGACGCGCATATGCCTCATGTTCTTGCATACGAGCATCG...

LOC131012128
ATGTTCTTGCATACGAGCATCGGATCATCTCCACGTGGTGGCAACTGTTTCTACTGGTTGGGTCCGTGGGCGCGGCTGGTGGTGACTGATCCGGAGCTCATAAAGGAGATAGTGCGGAGATTTGATGTTTTCGTGAGGCCCTTTCCAGAACTAACGAGGACCCTCGTTGGCGGCGGCCTTCTGTCTGCCGAGGGGGAAGAATGGGTTAAACGCAGGAAGATTGTGGACCATGCTTTCCATGTCGACAAGTTGAAAGATAT...

Protein

2 records

下载 Protein FASTA

XP_057796020.1
MEATFGLILSSIVVAASLTWAAKLLNTFWLRPRKIEKLLREQGLGGNPYRLIVGDMTDFMKSINEEQPKSIEISDAHMPHVLAYEHRIISTYGGGNCFYWLGPWARLVVTDPELIKEIVRRFDVFVRPFPELTRTLVGGGLLSAEGEEWVKRRKIVDHAFHVDKLKDMAPRIVLSCSLMIQKLKAAAATSCELDVWPFIEDLTGDVISRAAFGSSYEQGTRVFELIRQRVDLTMPLLQFFYLPGYKYLPTKSNRKVKAIS...

XP_057796021.1
MFLHTSIGSSPRGGNCFYWLGPWARLVVTDPELIKEIVRRFDVFVRPFPELTRTLVGGGLLSAEGEEWVKRRKIVDHAFHVDKLKDMAPRIVLSCSLMIQKLKAAAATSCELDVWPFIEDLTGDVISRAAFGSSYEQGTRVFELIRQRVDLTMPLLQFFYLPGYKYLPTKSNRKVKAISSEMKTILRGVIHMREKAMERGEDVPKDDLLGILMENSKNGGLMSIEDVIEECELFYLAGSKTVAGLLVWTLVMLCAYPEWQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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