Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001904`

染色体: Chr02 坐标: 34345375-34349600 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001904`
名称	SmilChr02G001904
描述	uncharacterized SmilChr02G001904
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	34345375 - 34349600 / `-`

ID 对照

NCBI Gene ID	`LOC131012138`
GeneID	`131012138`
locus_tag	`-`
NCBI Name	`LOC131012138`
原始查询	`LOC131012138`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669]; symbol=MUG3; hit=AT1G06740; species=arabidopsis; confidence=weak
产物	MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669]; symbol=MUG3; hit=AT1G06740; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G06740` (MUG3) MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=24.1; qcov=0.424; evalue=1.92e-08; confidence=weak
Rice	`Os12g0597300` - identity=25.2; qcov=0.344; evalue=6.17e-08; confidence=low
GO	-
KEGG	-
Pfam	PF03108 (DBD_Tnp_Mut); PF26130 (PB1-like)
InterPro	-
eggNOG	-
NR	GeneID:131012138

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796034.1`
2	Chromosome	染色体	0.00000	`XP_057796034.1`
3	Centromere	着丝粒	0.00000	`XP_057796034.1`
4	Chromatin	染色质	0.00000	`XP_057796034.1`
5	Telomere	端粒	0.00000	`XP_057796034.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:34347504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C19,C27
`Chr2:34347545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:34347568`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B45,D6
`Chr2:34347570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr2:34347688`	`CTG`	`C`	2bp_deletion	frameshift_variant	1	B92
`Chr2:34347688`	`CTG`	`C`	2bp_deletion	CDS_variant	1	B92
`Chr2:34347691`	`C`	`CTT`	2bp_insertion	frameshift_variant	1	B92
`Chr2:34347691`	`C`	`CTT`	2bp_insertion	CDS_variant	1	B92
`Chr2:34347804`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	A11,B10,B17,C41,C43
`Chr2:34347804`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B10,B17,C41,C43
`Chr2:34347862`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B134,B87
`Chr2:34347911`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C28,C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796034.1

451 aa

226

451

PB1-like

DBD_Tnp_Mut

PF26130 PB1-like 7-91 aa PF03108 DBD_Tnp_Mut 322-385 aa

XP_057796035.1

451 aa

226

451

PB1-like

DBD_Tnp_Mut

PF26130 PB1-like 7-91 aa PF03108 DBD_Tnp_Mut 322-385 aa

XP_057796036.1

451 aa

226

451

PB1-like

DBD_Tnp_Mut

PF26130 PB1-like 7-91 aa PF03108 DBD_Tnp_Mut 322-385 aa

XP_057796037.1

451 aa

226

451

PB1-like

DBD_Tnp_Mut

PF26130 PB1-like 7-91 aa PF03108 DBD_Tnp_Mut 322-385 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796034.1`	Pfam	`PF26130`	PB1-like	Domain	7	91	3e-14	53.8	PB1-like domain
`XP_057796034.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	322	385	5.7e-07	29.8	MuDR family transposase
`XP_057796035.1`	Pfam	`PF26130`	PB1-like	Domain	7	91	3e-14	53.8	PB1-like domain
`XP_057796035.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	322	385	5.7e-07	29.8	MuDR family transposase
`XP_057796036.1`	Pfam	`PF26130`	PB1-like	Domain	7	91	3e-14	53.8	PB1-like domain
`XP_057796036.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	322	385	5.7e-07	29.8	MuDR family transposase
`XP_057796037.1`	Pfam	`PF26130`	PB1-like	Domain	7	91	3e-14	53.8	PB1-like domain
`XP_057796037.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	322	385	5.7e-07	29.8	MuDR family transposase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057940052.1
GGTTAATGGCGGCTAAATTACTTAACTATACCCAAATTCTGGTTTGGGTACTATACTGCAATGTTTGTAAGACAAAATACCAATCTTACAATTTAATCTGATTTAGGTATTCCGTTCAAATTCCGGCAAGGGCAAAATAGGAATTCTGCATACGTGTCTACATTTAAGCAAGCTGGCGGCCAGGTGGCGTATAGGTGGCGTCCAACTGTGCGGAAGTTGAAACGACGTCGTTTCTGCAGAAGAAAAGGTGTTTGATTTGT...

XM_057940053.1
GGTTAATGGCGGCTAAATTACTTAACTATACCCAAATTCTGGTTTGGGTACTATACTGCAATGTTTGTAAGACAAAATACCAATCTTACAATTTAATCTGATTTAGGTATTCCGTTCAAATTCCGGCAAGGGCAAAATAGGAATTCTGCATACGTGTCTACATTTAAGCAAGCTGGCGGCCAGGTGGCGTATAGGTGGCGTCCAACTGTGCGGAAGTTGAAACGACGTCGTTTCTGCAGAAGAAAAGAAAGGGTTTCGCA...

CDS

4 records

下载 CDS FASTA

LOC131012138
ATGGTGAAAAGTTCTGAATTTGGTTTGCACATATGCCATGGTGGTCGCTTCATAAACAAAGAAGTCAAGCAACACTATATGGGAGGGGAGTTTCTGACCAAAATAGGGTTAGACCCTGATCGTTTTGGTTATTTTGATCTCGTTGATTATGTCAAAGAAATAGGGTATATGTCGTGGGAAAACCTTTATTATCGAATCCCTACCACTCAAAGACATATAGTAATCGTAGATGATAGTTGTGTCATGAATATGTTAACAGC...

Protein

4 records

下载 Protein FASTA

XP_057796034.1
MVKSSEFGLHICHGGRFINKEVKQHYMGGEFLTKIGLDPDRFGYFDLVDYVKEIGYMSWENLYYRIPTTQRHIVIVDDSCVMNMLTAMGKNLIITVCVEGGVKATKVTDHKQQPKKMVTVKGNDVEATDCDVEGNLGDAEGSESDCDGEPSDGDGEGSQTEGYGSERQCGVEGQSEGLQDKGRNDIDEESNIPRDVDDWGPLDNATFSEIEDVINMDCWGDSSEEEYQPSESDLSEVSLADLDYISDEENIELRKKLKKV...

XP_057796035.1
MVKSSEFGLHICHGGRFINKEVKQHYMGGEFLTKIGLDPDRFGYFDLVDYVKEIGYMSWENLYYRIPTTQRHIVIVDDSCVMNMLTAMGKNLIITVCVEGGVKATKVTDHKQQPKKMVTVKGNDVEATDCDVEGNLGDAEGSESDCDGEPSDGDGEGSQTEGYGSERQCGVEGQSEGLQDKGRNDIDEESNIPRDVDDWGPLDNATFSEIEDVINMDCWGDSSEEEYQPSESDLSEVSLADLDYISDEENIELRKKLKKV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器