Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001927`

染色体: Chr02 坐标: 34683167-34686374 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001927`
名称	SmilChr02G001927
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	34683167 - 34686374 / `+`

ID 对照

NCBI Gene ID	`LOC131012151`
GeneID	`131012151`
locus_tag	`-`
NCBI Name	`LOC131012151`
原始查询	`LOC131012151`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
产物	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
Arabidopsis	`AT4G27290` (AT4G27290) S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828837] identity=49.9; qcov=0.99; evalue=0; confidence=high
Rice	`Os01g0784700` - identity=45.3; qcov=1.01; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen)
KEGG	-
Pfam	PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2)
InterPro	-
eggNOG	-
NR	GeneID:131012151

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057796053.1`
2	Nucleus	细胞核	0.00000	`XP_057796053.1`
3	Chromosome	染色体	0.00000	`XP_057796053.1`
4	Centromere	着丝粒	0.00000	`XP_057796053.1`
5	Chromatin	染色质	0.00000	`XP_057796053.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:34683622`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,C85
`Chr2:34683713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr2:34683838`	`TA`	`T`	1bp_deletion	frameshift_variant	21	A16,B125,B138,B16,B17,B20,B49,B53,B71,B85,B90,B92,C12,C14,C53,C57,C58,C64,C66,C7,C72
`Chr2:34683919`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B90
`Chr2:34683919`	`GT`	`G`	1bp_deletion	CDS_variant	1	B90
`Chr2:34683992`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C74,D10
`Chr2:34684296`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B34,D8
`Chr2:34684331`	`G`	`GA`	1bp_insertion	frameshift_variant	19	A16,A21,B125,B138,B16,B17,B49,B53,B71,B85,B90,B92,C12,C53,C57,C58,C66,C7,C72
`Chr2:34684616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr2:34684682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B132,B5,C4,C42
`Chr2:34684827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B102,C87
`Chr2:34684936`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A6,B110

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796053.1

816 aa

408

816

B_lectin

S_locus_glycop

PAN_2

Pkinase

PK_Tyr_Ser-Thr

PF01453 B_lectin 74-176 aa PF00954 S_locus_glycop 209-315 aa PF08276 PAN_2 337-403 aa PF00069 Pkinase 500-699 aa PF07714 PK_Tyr_Ser-Thr 501-700 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796053.1`	Pfam	`PF01453`	B_lectin	Repeat	74	176	3.6e-38	131.0	D-mannose binding lectin
`XP_057796053.1`	Pfam	`PF00954`	S_locus_glycop	Domain	209	315	2.1e-17	64.4	S-locus glycoprotein domain
`XP_057796053.1`	Pfam	`PF08276`	PAN_2	Domain	337	403	2.7e-18	66.5	PAN-like domain
`XP_057796053.1`	Pfam	`PF00069`	Pkinase	Domain	500	699	1.1e-43	150.2	Protein kinase domain
`XP_057796053.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	501	700	4.1e-45	154.8	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940070.1
GACTAAAGAAACATAACTAAGTTGGTTAAACCGAAAGGCCTAAAAACTGTTATCATGGTAGAATGCAGAAAAAAAATCTCAAACTTTGTATTGATATGCGCCCTCATAATCCACACAATAAATGGCGCAAACGACACCATTAACCTTTCCGAAAGCATTAGAGATGGCGAAACACTGGTTTCATCAGGTGGGATGTTCGCGCTTGGATTTTTCAGTCCAGGAACCTCTACCAACCGGTATTTGGGCATATGGTACAACAA...

CDS

1 records

下载 CDS FASTA

LOC131012151
ATGGTAGAATGCAGAAAAAAAATCTCAAACTTTGTATTGATATGCGCCCTCATAATCCACACAATAAATGGCGCAAACGACACCATTAACCTTTCCGAAAGCATTAGAGATGGCGAAACACTGGTTTCATCAGGTGGGATGTTCGCGCTTGGATTTTTCAGTCCAGGAACCTCTACCAACCGGTATTTGGGCATATGGTACAACAAGATACCAAATCAGACAGTGGTTTGGGTTGCCAACAGAGAAGCTCCACTCACAAA...

Protein

1 records

下载 Protein FASTA

XP_057796053.1
MVECRKKISNFVLICALIIHTINGANDTINLSESIRDGETLVSSGGMFALGFFSPGTSTNRYLGIWYNKIPNQTVVWVANREAPLTNKTGVLTVTEPGILSLLNETNSSIWSTNRSRSVQNPIARLLDSGNLVVKDADDDDYLWQSFDYPCDTFLPGMSLGWNYASGVESYISSWRSESDPAPGRYSVHIDPTGYPQLLTKEGSTLKKRMGPWNGVRLSGGPNLSGDSVYNISLEMSNDVVKYRVDTLDPSVIWRSVLTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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