Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001936`

染色体: Chr02 坐标: 34767058-34768255 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001936`
名称	SmilChr02G001936
描述	glutathione S-transferase U19-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	34767058 - 34768255 / `-`

ID 对照

NCBI Gene ID	`LOC131012165`
GeneID	`131012165`
locus_tag	`-`
NCBI Name	`LOC131012165`
原始查询	`LOC131012165`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glutathione S-transferase U19-like
产物	glutathione S-transferase U19-like
Arabidopsis	`AT1G78380` (GSTU19) glutathione S-transferase TAU 19 [Source:NCBI gene (formerly Entrezgene);Acc:844174] identity=64.8; qcov=0.986; evalue=1.7e-104; confidence=high
Rice	`Os09g0367700` (OsGSTU5) - identity=51.1; qcov=1.04; evalue=1.95e-81; confidence=high
GO	GO:0004364 (glutathione transferase activity); GO:0005737 (cytoplasm); GO:0006749 (glutathione metabolic process)
KEGG	smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00043 (GST_C); PF02798 (GST_N); PF13409 (GST_N_2); PF13410 (GST_C_2); PF13417 (GST_N_3)
InterPro	-
eggNOG	-
NR	GeneID:131012165

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057796066.1`
2	Cytoplasm	细胞质	0.80000	`XP_057796066.1`
3	Nucleus	细胞核	0.00000	`XP_057796066.1`
4	Chromosome	染色体	0.00000	`XP_057796066.1`
5	Centromere	着丝粒	0.00000	`XP_057796066.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:34767163`	`GC`	`G`	1bp_deletion	frameshift_variant	19	A14,A8,B101,B128,B18,B27,B38,B39,B44,B54,B63,B75,B85,B86,B9,C74,C75,C86,D3
`Chr2:34767175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,A9,D1
`Chr2:34767180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C4,C70
`Chr2:34767185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr2:34767323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B105,B115,C45
`Chr2:34767357`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr2:34767358`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B107,B94,D3
`Chr2:34767424`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B19
`Chr2:34767424`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr2:34767866`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B91,D3
`Chr2:34767898`	`G`	`A`	EMS_canonical_SNV	stop_gained	105	A1,A11,A13,A19,A20,A23,A25,A3,A4,A5,A7,A8,B1,B100,B103,B104,B105,B106,B107,B108,B109,B112,B113,B117,B12,B120,B128,B131,B132,B137,B139,B14,B15,B2,B20,B21,B23,B24,B29,B31,B33,B38,B39,B4,B40,B45,B46,B49,B5,B52,B53,B55,B56,B58,B60,B61,B64,B65,B66,B7,B73,B79,B80,B82,B87,B89,B94,B96,B97,B98,C11,C17,C19,C2,C20,C22,C27,C28,C29,C32,C35,C36,C38,C4,C40,C43,C44,C47,C48,C5,C55,C58,C59,C60,C61,C68,C69,C70,C78,C79,C9,D10,D2,D3,D5
`Chr2:34767910`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796066.1

219 aa

110

219

GST_N

GST_N_3

GST_N_2

GST_C

GST_C_2

PF02798 GST_N 4-76 aa PF13417 GST_N_3 7-76 aa PF13409 GST_N_2 13-76 aa PF00043 GST_C 117-192 aa PF13410 GST_C_2 125-188 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796066.1`	Pfam	`PF02798`	GST_N	Domain	4	76	3.4e-18	66.5	Glutathione S-transferase, N-terminal domain
`XP_057796066.1`	Pfam	`PF13417`	GST_N_3	Domain	7	76	5.8e-12	46.5	Glutathione S-transferase, N-terminal domain
`XP_057796066.1`	Pfam	`PF13409`	GST_N_2	Domain	13	76	8.5e-10	39.8	Glutathione S-transferase, N-terminal domain
`XP_057796066.1`	Pfam	`PF00043`	GST_C	Domain	117	192	5.5e-09	36.9	Glutathione S-transferase, C-terminal domain
`XP_057796066.1`	Pfam	`PF13410`	GST_C_2	Domain	125	188	5.6e-11	43.1	Glutathione S-transferase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940083.1
TGATACTCTGCTCTCAGACATCTCTCAGGAATTTCTACTAAAACAAATCAAGTCAAAATCTAAAATTTTCTGGGAGGAAAATAAATGAAGGAGAAGGTGATTCTGGTGGATATGCATCCTAGCATGTTCGGAATAAGGGCGAGAGTGGCGTTAGCAGAAAAGGGCGTGGAATACGAGTGCAGAGAAGAGGACTTGCAAAACAAAAGCCAGTTTCTGCTTGAGATGAACCCTGTTCACAAGAAGATCCCCGTTTTGATCCA...

CDS

1 records

下载 CDS FASTA

LOC131012165
ATGAAGGAGAAGGTGATTCTGGTGGATATGCATCCTAGCATGTTCGGAATAAGGGCGAGAGTGGCGTTAGCAGAAAAGGGCGTGGAATACGAGTGCAGAGAAGAGGACTTGCAAAACAAAAGCCAGTTTCTGCTTGAGATGAACCCTGTTCACAAGAAGATCCCCGTTTTGATCCACAACGGCAAACCCGTTTGCGAGTCACTCATCTTTGTTGAGTACATCGACGAGGTTTGGAGCGACAAATCCCCTCTGCTGCCTTC...

Protein

1 records

下载 Protein FASTA

XP_057796066.1
MKEKVILVDMHPSMFGIRARVALAEKGVEYECREEDLQNKSQFLLEMNPVHKKIPVLIHNGKPVCESLIFVEYIDEVWSDKSPLLPSDPYRRAQARFWADYIDKKLYDAQRWIWCAKGEEQEVKKKEFFEILKQLESELGEKPFFGGERFGFVDVALITYTPWFQTYETCGNLSMEQHCPKLIAWLKRCSHKDTVSKSLSDPNKVYHYFLTLKERLGVV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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