Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001967`

染色体: Chr02 坐标: 35609110-35610780 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001967`
名称	SmilChr02G001967
描述	2-oxoglutarate-dependent dioxygenase DAO-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	35609110 - 35610780 / `-`

ID 对照

NCBI Gene ID	`LOC131012185`
GeneID	`131012185`
locus_tag	`-`
NCBI Name	`LOC131012185`
原始查询	`LOC131012185`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	2-oxoglutarate-dependent dioxygenase DAO-like
产物	2-oxoglutarate-dependent dioxygenase DAO-like
Arabidopsis	`AT1G14130` (AT1G14130) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837972] identity=56.2; qcov=0.96; evalue=8.45e-119; confidence=high
Rice	`Os02g0592000` - identity=54; qcov=0.98; evalue=5.45e-108; confidence=high
GO	GO:0009852 (auxin catabolic process); GO:0050302 (indole-3-acetaldehyde oxidase activity); GO:0051213 (dioxygenase activity)
KEGG	smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF03171 (2OG-FeII_Oxy); PF14226 (DIOX_N)
InterPro	-
eggNOG	-
NR	GeneID:131012185

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057796079.1`
2	Cytosol	细胞质基质	1.00000	`XP_057796079.1`
3	Nucleus	细胞核	0.20000	`XP_057796079.1`
4	Chromosome	染色体	0.00000	`XP_057796079.1`
5	Centromere	着丝粒	0.00000	`XP_057796079.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:35609237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:35609274`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:35609323`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr2:35609333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B35,B63,B83,C15
`Chr2:35609567`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,C28,C74,C81,D1
`Chr2:35609583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr2:35609693`	`G`	`GT`	1bp_insertion	frameshift_variant	4	B110,B130,B54,C33
`Chr2:35609693`	`G`	`GT`	1bp_insertion	CDS_variant	4	B110,B130,B54,C33
`Chr2:35610313`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B57,C8
`Chr2:35610404`	`GCT`	`G`	2bp_deletion	frameshift_variant	2	B50,C86
`Chr2:35610404`	`GCT`	`G`	2bp_deletion	CDS_variant	2	B50,C86
`Chr2:35610483`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B82,C5,C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796079.1

302 aa

151

302

DIOX_N

2OG-FeII_Oxy

PF14226 DIOX_N 7-77 aa PF03171 2OG-FeII_Oxy 151-247 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796079.1`	Pfam	`PF14226`	DIOX_N	Family	7	77	9.6e-12	46.3	non-haem dioxygenase in morphine synthesis N-terminal
`XP_057796079.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	151	247	6e-21	75.4	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940096.1
TTCTTTTTCTTTCTTTCCCCCCTTCCTTTTTTATTTGTATTTAAATGATCTGACAAATTCAAAAGCAATAAGCAGCCAACGGCGTGATGCTGAACGGATCACGGGCTTTAATATTATATGAACAAATTCTGTGGGTGTAAAATATCCGAGGATTAAGACGAGGATTCAGTTTCAGTGATTAGCAAAAAATTGTTTGATTTTGGTAAAGAGAGAGTAAGAATGAGTAGTAGTTCTAGCATCCCAGTGATTGATTTCGAGGA...

CDS

1 records

下载 CDS FASTA

LOC131012185
ATGAGTAGTAGTTCTAGCATCCCAGTGATTGATTTCGAGGATTTCCCATCGCAATCGCACAAACTGCTGCAAGCATCCCAGGATTGGGGATGCTTCAGGCTCATCAATCACACCATTTCCATAAATTTAATGGCGGAGATGAAGGCTGCAGTGAGAGCTCTTCTCGATCTTCCCGCCGAAATCAAACGGAGGAACAAAGACGTCATCGCCGGCAGCGGATACGTCGCGCCGTCCAAAACCAATCCGCTCTACGAAGGATT...

Protein

1 records

下载 Protein FASTA

XP_057796079.1
MSSSSSIPVIDFEDFPSQSHKLLQASQDWGCFRLINHTISINLMAEMKAAVRALLDLPAEIKRRNKDVIAGSGYVAPSKTNPLYEGLGLYDIASPESVHHFCSELEASPSQRETIVKYSAAVHELAMELGRMLCRSLGLDMDVFHGWPFQFRINKYNFSVESVGSAGVKLNTDSGFLTILQDDEHVGGLEVFDERSGEFVAVDPLAGSLLVNFGDVAKVWSNGRFCNVRHRVQCKEEAVRISIALFVLGPKEAAIEAPLE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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