当前解析结果
SmilChr02G002001| 统一新 Gene ID | SmilChr02G002001 |
|---|---|
| 名称 | SmilChr02G002001 |
| 描述 | probable receptor-like protein kinase At2g42960 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 36164031 - 36167642 / + |
| NCBI Gene ID | LOC131012214 |
|---|---|
| GeneID | 131012214 |
| locus_tag | - |
| NCBI Name | LOC131012214 |
| 原始查询 | LOC131012214 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable receptor-like protein kinase At2g42960 |
| 产物 | probable receptor-like protein kinase At2g42960 |
| Arabidopsis | AT3G59110 (AT3G59110)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825080] identity=72.7; qcov=0.998; evalue=0; confidence=high |
| Rice | Os10g0497600- identity=69.9; qcov=0.98; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012214 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796101.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796101.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796101.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796101.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796101.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:36165171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr2:36165292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,B30,C37 |
Chr2:36165549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr2:36165576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr2:36165771 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr2:36166161 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr2:36166583 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr2:36166823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:36166847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B61,B99,C5,C71 |
Chr2:36166988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,C15,C40 |
Chr2:36167020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr2:36167024 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B84,C26,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796101.1PF07714
PK_Tyr_Ser-Thr 184-452 aa
PF00069
Pkinase 185-450 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796101.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 184 | 452 | 6.6e-47 | 160.7 | Protein tyrosine and serine/threonine kinase |
XP_057796101.1 |
Pfam | PF00069 |
Pkinase | Domain | 185 | 450 | 9.1e-48 | 163.6 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。