Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002042`

染色体: Chr02 坐标: 36773289-36778258 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002042`
名称	SmilChr02G002042
描述	mitogen-activated protein kinase 20-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	36773289 - 36778258 / `-`

ID 对照

NCBI Gene ID	`LOC131012229`
GeneID	`131012229`
locus_tag	`-`
NCBI Name	`LOC131012229`
原始查询	`LOC131012229`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitogen-activated protein kinase 20-like
产物	mitogen-activated protein kinase 20-like
Arabidopsis	`AT2G42880` (MPK20) MAP kinase 20 [Source:NCBI gene (formerly Entrezgene);Acc:818888] identity=69.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0629900` (OsMPK20-1) - identity=71.6; qcov=1.02; evalue=0; confidence=high
GO	GO:0004707 (MAP kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction)
KEGG	-
Pfam	PF00069 (Pkinase); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131012229

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057796120.1`
2	Nucleus	细胞核	0.20000	`XP_057796120.1`
3	Chromosome	染色体	0.00000	`XP_057796120.1`
4	Centromere	着丝粒	0.00000	`XP_057796120.1`
5	Chromatin	染色质	0.00000	`XP_057796120.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:36773725`	`C`	`CTG`	2bp_insertion	frameshift_variant	44	A1,A11,A20,A23,A3,B103,B110,B117,B137,B15,B18,B2,B31,B36,B40,B5,B54,B58,B59,B6,B66,B67,B79,B82,B84,B87,B9,B94,C16,C19,C20,C24,C27,C36,C39,C49,C64,C66,C83,C86,D10,D11,D2,D5
`Chr2:36773797`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,A25,C18
`Chr2:36773915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,A20,B117,B79,C36
`Chr2:36773948`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr2:36774002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B121,B133,B57,B88,C80
`Chr2:36774084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr2:36774204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,D7
`Chr2:36774245`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B124,B22,B80,C25
`Chr2:36774305`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:36774330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr2:36774736`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:36774785`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796120.1

612 aa

306

612

Pkinase

PK_Tyr_Ser-Thr

Kdo

PF00069 Pkinase 25-316 aa PF07714 PK_Tyr_Ser-Thr 26-236 aa PF06293 Kdo 56-163 aa

XP_057796121.1

609 aa

304

609

Pkinase

PK_Tyr_Ser-Thr

Kdo

PF00069 Pkinase 25-316 aa PF07714 PK_Tyr_Ser-Thr 26-236 aa PF06293 Kdo 56-163 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796120.1`	Pfam	`PF00069`	Pkinase	Domain	25	316	2.3e-64	218.1	Protein kinase domain
`XP_057796120.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	26	236	3e-31	109.4	Protein tyrosine and serine/threonine kinase
`XP_057796120.1`	Pfam	`PF06293`	Kdo	Family	56	163	3.1e-05	24.2	Lipopolysaccharide kinase (Kdo/WaaP) family
`XP_057796121.1`	Pfam	`PF00069`	Pkinase	Domain	25	316	2.2e-64	218.1	Protein kinase domain
`XP_057796121.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	26	236	3e-31	109.4	Protein tyrosine and serine/threonine kinase
`XP_057796121.1`	Pfam	`PF06293`	Kdo	Family	56	163	3.1e-05	24.2	Lipopolysaccharide kinase (Kdo/WaaP) family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940137.1
GGATAAAGCCCCAACATACAAAAACACGAAGGGTACAACTCATAAGCAGAGATGTACAGCTCTTAATTCGCTTCCCTAGTGTATACATACACACATTCTCATTCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGAGTCTGTGTCGGTGTCAGAAGCAACCCCACCGTCAGAGCAACCACATCGTTCCTTAAGATCCACACATTCACGCGCTCGTGTGAATAAGCTGTTGATGGTTGTTTCTGTTGTTCTATGATTGCT...

XM_057940138.1
CATTCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGAGTCTGTGTCGGTGTCAGAAGCAACCCCACCGTCAGAGCAACCACATCGTTCCTTAAGATCCACACATTCACGCGCTCGTGTGAATAAGCTGTTGATGGTTGTTTCTGTTGTTCTATGATTGCTGGTGAAGACGAAGAAGAGGAGCGTTATATGAGGGATAGTTTTCTCTTTGTTTTTAACTGTGATTCGAGGCGTACGAGGTCGGACTGCTCCTTTTCCATA...

CDS

2 records

下载 CDS FASTA

LOC131012229
ATGCAGTCGGATCACCGAAAGAAGAGTTCAACAGAATTAGACTTCTTTTCTGAGTATAGTGAGGCAAGCAGGTATAAAATCCAGGAGGTCGTAGGAAAAGGAAGTTATGGAGTTGTTTGTTCAGCAATTGACACTCGTACCGGTGAAAAGGTGGCAATAAAGAAAATTCATGACATCTTCGAGCACATATCTGATGCTGCTAGGATTCTCCGAGAGGTAAAGCTTCTCAGGCTTTTGCGGCACCCAGATGTTGTCGAGAT...

Protein

2 records

下载 Protein FASTA

XP_057796120.1
MQSDHRKKSSTELDFFSEYSEASRYKIQEVVGKGSYGVVCSAIDTRTGEKVAIKKIHDIFEHISDAARILREVKLLRLLRHPDVVEIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPMTVFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGRPLFAGKNVVHQLDMITDVLGTPSMDTISRVRN...

XP_057796121.1
MQSDHRKKSSTELDFFSEYSEASRYKIQEVVGKGSYGVVCSAIDTRTGEKVAIKKIHDIFEHISDAARILREVKLLRLLRHPDVVEIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPMTVFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGRPLFAGKNVVHQLDMITDVLGTPSMDTISRVRN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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