当前解析结果
SmilChr02G002018| 统一新 Gene ID | SmilChr02G002018 |
|---|---|
| 名称 | SmilChr02G002018 |
| 描述 | mitogen-activated protein kinase 20-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 36383783 - 36388678 / + |
| NCBI Gene ID | LOC131012230 |
|---|---|
| GeneID | 131012230 |
| locus_tag | - |
| NCBI Name | LOC131012230 |
| 原始查询 | LOC131012230 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitogen-activated protein kinase 20-like |
| 产物 | mitogen-activated protein kinase 20-like |
| Arabidopsis | AT2G42880 (MPK20)MAP kinase 20 [Source:NCBI gene (formerly Entrezgene);Acc:818888] identity=69.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0629900 (OsMPK20-1)- identity=71.8; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0004707 (MAP kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012230 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057796122.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057796122.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796122.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796122.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796122.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:36384310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B5,D11 |
Chr2:36385748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr2:36386136 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C69 |
Chr2:36386138 |
A |
AG |
1bp_insertion | frameshift_variant | 1 | C69 |
Chr2:36386138 |
A |
AG |
1bp_insertion | CDS_variant | 1 | C69 |
Chr2:36387210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B5 |
Chr2:36387228 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr2:36387261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C85,D7 |
Chr2:36387328 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr2:36388062 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,B57,C80 |
Chr2:36388116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B77 |
Chr2:36388267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B113,B28,B50,B72,C18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796122.1PF00069
Pkinase 25-316 aa
PF07714
PK_Tyr_Ser-Thr 26-235 aa
PF06293
Kdo 56-163 aa
XP_057796123.1PF00069
Pkinase 25-316 aa
PF07714
PK_Tyr_Ser-Thr 26-235 aa
PF06293
Kdo 56-163 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796122.1 |
Pfam | PF00069 |
Pkinase | Domain | 25 | 316 | 2.9e-64 | 217.7 | Protein kinase domain |
XP_057796122.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 26 | 235 | 3.2e-31 | 109.3 | Protein tyrosine and serine/threonine kinase |
XP_057796122.1 |
Pfam | PF06293 |
Kdo | Family | 56 | 163 | 3.1e-05 | 24.2 | Lipopolysaccharide kinase (Kdo/WaaP) family |
XP_057796123.1 |
Pfam | PF00069 |
Pkinase | Domain | 25 | 316 | 2.9e-64 | 217.7 | Protein kinase domain |
XP_057796123.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 26 | 235 | 3.1e-31 | 109.3 | Protein tyrosine and serine/threonine kinase |
XP_057796123.1 |
Pfam | PF06293 |
Kdo | Family | 56 | 163 | 3.1e-05 | 24.2 | Lipopolysaccharide kinase (Kdo/WaaP) family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。