Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002060`

染色体: Chr02 坐标: 37085986-37092133 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002060`
名称	SmilChr02G002060
描述	uncharacterized SmilChr02G002060
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	37085986 - 37092133 / `+`

ID 对照

NCBI Gene ID	`LOC131012257`
GeneID	`131012257`
locus_tag	`-`
NCBI Name	`LOC131012257`
原始查询	`LOC131012257`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:825046]; symbol=AT3G58770; hit=AT3G58770; species=arabidopsis; confidence=weak
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:825046]; symbol=AT3G58770; hit=AT3G58770; species=arabidopsis; confidence=weak
Arabidopsis	`AT3G58770` (AT3G58770) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:825046] identity=34.6; qcov=0.112; evalue=1.81e-12; confidence=weak
Rice	`-` -
GO	-
KEGG	-
Pfam	PF28218 (EMF1)
InterPro	-
eggNOG	-
NR	GeneID:131012257

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796145.1`
2	Chromosome	染色体	0.00000	`XP_057796145.1`
3	Centromere	着丝粒	0.00000	`XP_057796145.1`
4	Chromatin	染色质	0.00000	`XP_057796145.1`
5	Telomere	端粒	0.00000	`XP_057796145.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:37086537`	`GA`	`G`	1bp_deletion	frameshift_variant	2	B121,C80
`Chr2:37086537`	`GA`	`G`	1bp_deletion	CDS_variant	2	B121,C80
`Chr2:37086555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B124,B22,B80,C25
`Chr2:37086894`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,A19,B68,C43
`Chr2:37086895`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C2,C32,C47,C68
`Chr2:37086907`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr2:37089071`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr2:37089240`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B13,B29,B97,C52,C72
`Chr2:37089675`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr2:37089874`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,B139,C82
`Chr2:37090265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr2:37090400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796145.1

1137 aa

568

1137

EMF1

PF28218 EMF1 5-50 aa

XP_057796146.1

1137 aa

568

1137

EMF1

PF28218 EMF1 5-50 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796145.1`	Pfam	`PF28218`	EMF1	Family	5	50	2.7e-09	36.9	Embryonic flower 1
`XP_057796146.1`	Pfam	`PF28218`	EMF1	Family	5	50	2.7e-09	36.9	Embryonic flower 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940162.1
GGAAGCTGAAAATGGGGATTGACACCACATTATACACTCCACGCCCTCTCCCTTCTGCACCTTTCGAGCGGGAAACGCATACACTATGCTATCCCTTTCCCTCTCTCTCTCTTAAAAAGTACCTCAAGAACTCCAAACTCTTCTCTCTCCTCACCGATCTCACAAACACAAACACAAACACCACCTTCCAATTTACTTGTATGAATGATTGCGCTTTCAACTAGAGTTTTTCTCTCTCTAGGTACCTGTGGTTTTCCCTC...

XM_057940163.1
GGAAGCTGAAAATGGGGATTGACACCACATTATACACTCCACGCCCTCTCCCTTCTGCACCTTTCGAGCGGGAAACGCATACACTATGCTATCCCTTTCCCTCTCTCTCTCTTAAAAAGTACCTCAAGAACTCCAAACTCTTCTCTCTCCTCACCGATCTCACAAACACAAACACAAACACCACCTTCCAATTTACTTGTATGAATGATTGCGCTTTCAACTAGAGTTTTTCTCTCTCTAGCGCTGAGATGCAAGGGGGT...

CDS

2 records

下载 CDS FASTA

LOC131012257
ATGCAAGGGGGTTTTTCCATACGGGAATATGCTTCGAGGATGAGAAGTATAAACGTGGTCAAGTGCTGGCCGTTCGATGAGACATTGAGCGAAGAAACTGTGAAATCGCTGCTGCCTCCGATCGTCGTCAAGAGATTCACGTGGTGGCTTGATGAGCTCGAGTATTTGAGCTCAGAAACAGCCGAGAAACTCACAATTTTTGAGAAAAAGACAAACAAAGTGTCGGAAAAGGGAGAAACATCTTCGATAAATGCAGGCAG...

Protein

2 records

下载 Protein FASTA

XP_057796145.1
MQGGFSIREYASRMRSINVVKCWPFDETLSEETVKSLLPPIVVKRFTWWLDELEYLSSETAEKLTIFEKKTNKVSEKGETSSINAGRDLEDTEEGVKEVKLKSFKGKMRATKKRSILEIFAVAPPVKRAISGEEEGEDNDDDDNVGINRAPKRKRKKKKKLKNTDAILKKALRAVKKIKRKKAAAAAEKRGGEISDKDNCFKLKPRTQEKATGNSSLSCSNEVANDIRHFLSIPKRKGPYKKLVPCKSSKLIEENQHPEL...

XP_057796146.1
MQGGFSIREYASRMRSINVVKCWPFDETLSEETVKSLLPPIVVKRFTWWLDELEYLSSETAEKLTIFEKKTNKVSEKGETSSINAGRDLEDTEEGVKEVKLKSFKGKMRATKKRSILEIFAVAPPVKRAISGEEEGEDNDDDDNVGINRAPKRKRKKKKKLKNTDAILKKALRAVKKIKRKKAAAAAEKRGGEISDKDNCFKLKPRTQEKATGNSSLSCSNEVANDIRHFLSIPKRKGPYKKLVPCKSSKLIEENQHPEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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