当前解析结果
SmilChr02G002061| 统一新 Gene ID | SmilChr02G002061 |
|---|---|
| 名称 | SmilChr02G002061 |
| 描述 | agamous-like MADS-box protein MADS1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 37130548 - 37136485 / + |
| NCBI Gene ID | LOC131012258 |
|---|---|
| GeneID | 131012258 |
| locus_tag | - |
| NCBI Name | LOC131012258 |
| 原始查询 | LOC131012258 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | agamous-like MADS-box protein MADS1 |
| 产物 | agamous-like MADS-box protein MADS1 |
| Arabidopsis | AT3G58780 (SHP1)K-box region and MADS-box transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:825047] identity=64.3; qcov=1.01; evalue=2.07e-106; confidence=high |
| Rice | Os01g0201700 (RAG)- identity=63.8; qcov=0.963; evalue=3.14e-99; confidence=high |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF00319 (SRF-TF); PF01486 (K-box) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012258 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796147.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057796147.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057796147.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057796147.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057796147.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:37130871 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B90,D10 |
Chr2:37130918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B131,C17,C6,D7 |
Chr2:37130922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B115,C26,C45,C71 |
Chr2:37130930 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C31,C49,C55 |
Chr2:37130933 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr2:37130943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B19,C69 |
Chr2:37130954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B38,C13,C55 |
Chr2:37130963 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | C32,C68 |
Chr2:37130963 |
G |
GA |
1bp_insertion | CDS_variant | 2 | C32,C68 |
Chr2:37131027 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B32,B67,C73 |
Chr2:37131040 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
Chr2:37135628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B33,B46,B59,C60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796147.1PF00319
SRF-TF 26-73 aa
PF01486
K-box 99-186 aa
XP_057796148.1PF00319
SRF-TF 26-73 aa
PF01486
K-box 99-187 aa
XP_057796149.1PF00319
SRF-TF 26-73 aa
PF01486
K-box 99-187 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796147.1 |
Pfam | PF00319 |
SRF-TF | Domain | 26 | 73 | 8.7e-27 | 93.0 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
XP_057796147.1 |
Pfam | PF01486 |
K-box | Family | 99 | 186 | 4.6e-24 | 85.1 | K-box region |
XP_057796148.1 |
Pfam | PF00319 |
SRF-TF | Domain | 26 | 73 | 8.6e-27 | 93.1 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
XP_057796148.1 |
Pfam | PF01486 |
K-box | Family | 99 | 187 | 6.8e-25 | 87.8 | K-box region |
XP_057796149.1 |
Pfam | PF00319 |
SRF-TF | Domain | 26 | 73 | 8.6e-27 | 93.1 | SRF-type transcription factor (DNA-binding and dimerisation domain) |
XP_057796149.1 |
Pfam | PF01486 |
K-box | Family | 99 | 187 | 6.8e-25 | 87.8 | K-box region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。