Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002070`

染色体: Chr02 坐标: 37283023-37290216 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002070`
名称	SmilChr02G002070
描述	probable LRR receptor-like serine/threonine-protein kinase At1g07650
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	37283023 - 37290216 / `+`

ID 对照

NCBI Gene ID	`LOC131012264`
GeneID	`131012264`
locus_tag	`-`
NCBI Name	`LOC131012264`
原始查询	`LOC131012264`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At1g07650
产物	probable LRR receptor-like serine/threonine-protein kinase At1g07650
Arabidopsis	`AT1G07650` (AT1G07650) Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:837278] identity=66.2; qcov=0.981; evalue=0; confidence=high
Rice	`Os04g0616700` - identity=41.8; qcov=0.948; evalue=0; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF11721 (Malectin); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131012264

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057796155.1`
2	Nucleus	细胞核	0.00000	`XP_057796155.1`
3	Chromosome	染色体	0.00000	`XP_057796155.1`
4	Centromere	着丝粒	0.00000	`XP_057796155.1`
5	Chromatin	染色质	0.00000	`XP_057796155.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:37283272`	`G`	`GAT`	2bp_insertion	frameshift_variant	29	A11,A15,A19,A25,A4,B103,B104,B11,B128,B133,B46,B57,B58,B59,B6,B61,B66,B84,B88,B95,B98,C20,C26,C29,C47,C51,C67,C74,C81
`Chr2:37283593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C42,D3,D8
`Chr2:37283627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:37285664`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr2:37285854`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B32,B67,C53
`Chr2:37285864`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,C26
`Chr2:37286031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr2:37287270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,C48
`Chr2:37287294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B121,C80
`Chr2:37287475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr2:37287669`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr2:37287971`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B95,B98,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796155.1

1001 aa

500

1001

LRR_1

LRR_8

LRR_1

Malectin

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 113-134 aa PF00560 LRR_1 160-182 aa PF00560 LRR_1 184-206 aa PF13855 LRR_8 281-339 aa PF00560 LRR_1 304-326 aa PF11721 Malectin 407-595 aa PF00069 Pkinase 674-937 aa PF07714 PK_Tyr_Ser-Thr 675-939 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796155.1`	Pfam	`PF00560`	LRR_1	Repeat	113	134	3.3e-26	86.4	Leucine Rich Repeat
`XP_057796155.1`	Pfam	`PF00560`	LRR_1	Repeat	160	182	3.3e-26	86.4	Leucine Rich Repeat
`XP_057796155.1`	Pfam	`PF00560`	LRR_1	Repeat	184	206	3.3e-26	86.4	Leucine Rich Repeat
`XP_057796155.1`	Pfam	`PF13855`	LRR_8	Repeat	281	339	1.2e-20	73.7	Leucine rich repeat
`XP_057796155.1`	Pfam	`PF00560`	LRR_1	Repeat	304	326	3.3e-26	86.4	Leucine Rich Repeat
`XP_057796155.1`	Pfam	`PF11721`	Malectin	Domain	407	595	2.4e-43	148.7	Malectin domain
`XP_057796155.1`	Pfam	`PF00069`	Pkinase	Domain	674	937	5.2e-48	164.4	Protein kinase domain
`XP_057796155.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	675	939	5.2e-50	170.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940172.1
AGTATTTATTGATGTAATAAAAACCAAGAGAATTCTTGGATGAGTACAAAATATCAAAAAGTCGAAATGCAATGAGTTAGCTGCCAATATAAAATTGGCCTCCACCCTCACTGCTGTCAGCTGTCTAATCCTATATATATATATTCAATTGTTTTTCTCTCTCCTTCAATTTCCACGAGAGGATGAGTTTGTAGTTGTTCACTGAAGCTAAAGCTTCACTATTCCATGCAGATTAGATTTTTATTACATGATGGGGAAAA...

CDS

1 records

下载 CDS FASTA

LOC131012264
ATGATGGGGAAAACGACATATTTAAAACTTTTCTGCTTCATCTTGATTGCCTCCACCACTTTGTGCAGCTCAGCAGCCAAGCAGCAGCTCGACCAAAACGAAGTGAGGGCATTGAAAGAGATAGCGAAAATATTGGGGAAAAAAGACTGGAACTTCAGCAAAGATCGCTGCAGTGGAGAAGGGAATTGGAGTATTCCTGTTACAGTAAAAGGGTTTGAGAGCTCTGTCATTTGTGACTGCTCTTTTAATCAGATGTCTAC...

Protein

1 records

下载 Protein FASTA

XP_057796155.1
MMGKTTYLKLFCFILIASTTLCSSAAKQQLDQNEVRALKEIAKILGKKDWNFSKDRCSGEGNWSIPVTVKGFESSVICDCSFNQMSTCHIVSIALKAQNLTGVVPSEFAKFRHLKHLDLSRNYFNGSIPSQWATLKLADLSLMGNGLSGPFPKVITKMASLVNLSLEGNKFSGPIPSDIGQLVNLRKLVLSSNAFTGDLPEALAKLTLLTDMRISDNNFTGKIPDFISSWKDVEKLHMQGCSLKGPIPSTISALTSLSDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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