Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002090`

染色体: Chr02 坐标: 37487786-37493220 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002090`
名称	SmilChr02G002090
描述	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	37487786 - 37493220 / `-`

ID 对照

NCBI Gene ID	`LOC131012277`
GeneID	`131012277`
locus_tag	`-`
NCBI Name	`LOC131012277`
原始查询	`LOC131012277`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
产物	probable alpha%2Calpha-trehalose-phosphate synthase [UDP-forming] 7
Arabidopsis	`AT1G06410` (TPS7) trehalose-phosphatase/synthase 7 [Source:NCBI gene (formerly Entrezgene);Acc:837152] identity=75.4; qcov=0.985; evalue=0; confidence=high
Rice	`Os01g0730300` (OsTPS3) - identity=68.7; qcov=1; evalue=0; confidence=high
GO	GO:0003824 (catalytic activity); GO:0005829 (cytosol); GO:0005992 (trehalose biosynthetic process); GO:0070413 (GO:0070413)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00982 (Glyco_transf_20); PF02358 (Trehalose_PPase); PF08282 (Hydrolase_3)
InterPro	-
eggNOG	-
NR	GeneID:131012277

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057796175.1`
2	Cytoplasm	细胞质	0.40000	`XP_057796175.1`
3	Nucleus	细胞核	0.00000	`XP_057796175.1`
4	Chromosome	染色体	0.00000	`XP_057796175.1`
5	Centromere	着丝粒	0.00000	`XP_057796175.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:37488657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B45
`Chr2:37488845`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B80,C61
`Chr2:37488916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,B45
`Chr2:37489368`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A15,B45
`Chr2:37489416`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B46,C81,D7
`Chr2:37489444`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B114
`Chr2:37489444`	`TC`	`T`	1bp_deletion	CDS_variant	1	B114
`Chr2:37489452`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B25,D10,D11
`Chr2:37491431`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A15,B45
`Chr2:37491557`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:37491561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B82,C48
`Chr2:37491611`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B110,C25,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796175.1

867 aa

434

867

Glyco_transf_20

Trehalose_PPase

Hydrolase_3

PF00982 Glyco_transf_20 62-545 aa PF02358 Trehalose_PPase 595-830 aa PF08282 Hydrolase_3 723-799 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796175.1`	Pfam	`PF00982`	Glyco_transf_20	Family	62	545	4.8e-176	586.8	Glycosyltransferase family 20
`XP_057796175.1`	Pfam	`PF02358`	Trehalose_PPase	Family	595	830	4.3e-76	255.8	Trehalose-phosphatase
`XP_057796175.1`	Pfam	`PF08282`	Hydrolase_3	Domain	723	799	9.8e-07	29.5	haloacid dehalogenase-like hydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940192.1
TTAGCGGCAGGCCCGCAGCCCCGATGGTGGCGACTTTATTGATTCTTTTACTTGCTGTCACGTTTTTGTTTCAGAAGCAAATATTAATATATATTATTCCAATTTTACCTAATTGAAAATATTAAATTAATTGTTATTCTCAAGAATATTCATATCCATCACTTTTGCTTATACATGCTGTTAGCTGTATGCGATCTTCGGTTCCTACATTGCGTGTACTGCAACTCAGATTAATAACTTTCATTCTTTTCGCGTCAAAC...

CDS

1 records

下载 CDS FASTA

LOC131012277
ATGATGTCAAGATCTTATACCAACCTTTTGGATTTAGCATCTGGAAATTTCCCAACAGTGGGTAGGGAGAGGGACCGGAAGCGCCTCCCGAGGGTTATGACCGTTCCGGGGAATATTCTTGAGCTAGATGATGAACAGGCTAGCAGTGTTACATCGGAAAACCCATCTTCACTTCTTGGTGATAGGATCATCATTGTTGCAAATCTTCTGCCTCTGAAAGCAAAACGAAGGCCTGACAATAAGGGCTGGACTTTTAGCTG...

Protein

1 records

下载 Protein FASTA

XP_057796175.1
MMSRSYTNLLDLASGNFPTVGRERDRKRLPRVMTVPGNILELDDEQASSVTSENPSSLLGDRIIIVANLLPLKAKRRPDNKGWTFSWNEDSLLLRVRDGFPEDMEVLYVGSLPVDVDPIEQDDVANYLLEKFKCVPAFLPPSLLEKYYHGFCKKHLWPLFHYMLPFSSDHGIRFDRSMWEAYVSANKLFSQKVIEIINPEDDFVWIHDYHLMVLPTFLRRRFVRLRMGFFLHSPFPSSELYRSLPVREEILKALLNSDLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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