当前解析结果
SmilChr02G002160| 统一新 Gene ID | SmilChr02G002160 |
|---|---|
| 名称 | SmilChr02G002160 |
| 描述 | uncharacterized SmilChr02G002160 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 38819841 - 38826920 / - |
| NCBI Gene ID | LOC131012350 |
|---|---|
| GeneID | 131012350 |
| locus_tag | - |
| NCBI Name | LOC131012350 |
| 原始查询 | LOC131012350 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | elongation factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:817658]; symbol=EMB2785; hit=AT2G31060; species=arabidopsis; confidence=high |
| 产物 | elongation factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:817658]; symbol=EMB2785; hit=AT2G31060; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G31060 (EMB2785)elongation factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:817658] identity=79.1; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0752700- identity=76.3; qcov=0.999; evalue=0; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005829 (cytosol); GO:1990904 (ribonucleoprotein complex) |
| KEGG | - |
| Pfam | PF00009 (GTP_EFTU); PF00679 (EFG_C); PF01926 (MMR_HSR1); PF03144 (GTP_EFTU_D2); PF21018 (BipA_C); PF22042 (EF-G_D2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012350 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057796262.1 |
| 2 | Chloroplast | 叶绿体 | 1.00000 | XP_057796262.1 |
| 3 | Mitochondrion matrix | 线粒体基质 | 0.20000 | XP_057796262.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057796262.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057796262.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:38821028 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,B2 |
Chr2:38821707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,D8 |
Chr2:38822093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,B107,B54,C8 |
Chr2:38824541 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B30,C37,D4 |
Chr2:38824583 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B115,B94,C38,C45,C49 |
Chr2:38824652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,D8 |
Chr2:38825102 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr2:38826658 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C1,C59 |
Chr2:38826730 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796262.1PF00009
GTP_EFTU 66-260 aa
PF01926
MMR_HSR1 70-187 aa
PF22042
EF-G_D2 269-358 aa
PF03144
GTP_EFTU_D2 284-358 aa
PF00679
EFG_C 464-547 aa
PF21018
BipA_C 554-662 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796262.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 66 | 260 | 2.1e-52 | 178.1 | Elongation factor Tu GTP binding domain |
XP_057796262.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 70 | 187 | 4.7e-05 | 24.2 | 50S ribosome-binding GTPase |
XP_057796262.1 |
Pfam | PF22042 |
EF-G_D2 | Domain | 269 | 358 | 1.7e-09 | 38.4 | Elongation factor G domain 2 |
XP_057796262.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 284 | 358 | 8.7e-09 | 36.4 | Elongation factor Tu domain 2 |
XP_057796262.1 |
Pfam | PF00679 |
EFG_C | Domain | 464 | 547 | 1.5e-20 | 73.8 | Elongation factor G C-terminus |
XP_057796262.1 |
Pfam | PF21018 |
BipA_C | Domain | 554 | 662 | 3.6e-44 | 149.7 | TypA/BipA C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。