Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002187`

染色体: Chr02 坐标: 39074556-39076521 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002187`
名称	SmilChr02G002187
描述	zinc finger BED domain-containing protein RICESLEEPER 2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	39074556 - 39076521 / `-`

ID 对照

NCBI Gene ID	`LOC131012376`
GeneID	`131012376`
locus_tag	`-`
NCBI Name	`LOC131012376`
原始查询	`LOC131012376`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger BED domain-containing protein RICESLEEPER 2-like
产物	zinc finger BED domain-containing protein RICESLEEPER 2-like
Arabidopsis	`AT3G42170` (DAYSLEEPER) BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=36.5; qcov=0.964; evalue=2.47e-63; confidence=medium
Rice	`Os05g0583100` - identity=38.2; qcov=1; evalue=4.38e-76; confidence=medium
GO	GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical)
InterPro	-
eggNOG	-
NR	GeneID:131012376

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796287.1`
2	Cytoplasm	细胞质	0.20000	`XP_057796287.1`
3	Chromosome	染色体	0.00000	`XP_057796287.1`
4	Centromere	着丝粒	0.00000	`XP_057796287.1`
5	Chromatin	染色质	0.00000	`XP_057796287.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:39075448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B93,C53,D2
`Chr2:39075465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B26,B36,B58,C35,C51
`Chr2:39075474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B26,B30,C51
`Chr2:39075504`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,B26,B51,C15,C57
`Chr2:39075510`	`GC`	`G`	1bp_deletion	frameshift_variant	194	A1,A10,A11,A14,A15,A19,A2,A20,A21,A23,A4,A5,A6,A7,A8,A9,B10,B101,B102,B104,B105,B106,B108,B109,B111,B112,B114,B115,B117,B118,B119,B12,B120,B121,B123,B126,B128,B130,B131,B132,B133,B134,B136,B137,B139,B14,B140,B15,B16,B18,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B32,B33,B34,B35,B36,B37,B38,B39,B4,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B57,B58,B59,B6,B60,B62,B63,B64,B65,B66,B67,B68,B70,B72,B73,B75,B79,B80,B82,B83,B84,B85,B86,B88,B89,B9,B91,B92,B93,B94,B95,B96,B97,B98,C11,C12,C13,C14,C16,C17,C18,C19,C2,C20,C21,C23,C24,C25,C26,C27,C28,C29,C3,C30,C32,C33,C34,C35,C36,C38,C4,C40,C41,C43,C44,C45,C46,C47,C48,C49,C50,C52,C55,C56,C57,C58,C6,C61,C63,C68,C69,C7,C71,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C84,C85,C86,C87,C9,D1,D11,D3,D4,D5,D6,D8,D9
`Chr2:39075522`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B118,B126,B2
`Chr2:39075523`	`G`	`A`	EMS_canonical_SNV	stop_gained	66	A10,A23,A7,A8,B101,B102,B109,B110,B117,B118,B12,B121,B131,B137,B16,B21,B24,B28,B3,B36,B38,B39,B44,B45,B48,B50,B53,B54,B6,B62,B64,B67,B68,B8,B88,B9,B93,C12,C14,C16,C17,C2,C22,C24,C25,C26,C32,C34,C35,C4,C40,C41,C43,C46,C58,C63,C67,C68,C7,C77,C79,C81,C82,C84,C85,D8
`Chr2:39075554`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,C54
`Chr2:39075588`	`GC`	`G`	1bp_deletion	frameshift_variant	12	A13,A3,B114,B130,B22,B56,B96,C15,C53,C59,C60,D10
`Chr2:39075621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr2:39075646`	`CAA`	`C`	2bp_deletion	frameshift_variant	5	A13,B2,B58,C15,C57
`Chr2:39075646`	`CAA`	`C`	2bp_deletion	CDS_variant	5	A13,B2,B58,C15,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796287.1

373 aa

186

373

ZBED1_RNase-like_helical

hAT-like_RNase-H

Dimer_Tnp_hAT

PF27039 ZBED1_RNase-like_helical 1-99 aa PF14372 hAT-like_RNase-H 120-214 aa PF05699 Dimer_Tnp_hAT 264-348 aa

XP_057796288.1

364 aa

182

364

ZBED1_RNase-like_helical

hAT-like_RNase-H

Dimer_Tnp_hAT

PF27039 ZBED1_RNase-like_helical 1-99 aa PF14372 hAT-like_RNase-H 120-214 aa PF05699 Dimer_Tnp_hAT 264-348 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796287.1`	Pfam	`PF27039`	ZBED1_RNase-like_helical	Domain	1	99	4.4e-24	85.4	ZBED1 RNase-like helical domain
`XP_057796287.1`	Pfam	`PF14372`	hAT-like_RNase-H	Domain	120	214	6.7e-30	103.9	hAT-like transposase, RNase-H fold
`XP_057796287.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	264	348	3.4e-24	85.1	hAT family C-terminal dimerisation region
`XP_057796288.1`	Pfam	`PF27039`	ZBED1_RNase-like_helical	Domain	1	99	4.2e-24	85.4	ZBED1 RNase-like helical domain
`XP_057796288.1`	Pfam	`PF14372`	hAT-like_RNase-H	Domain	120	214	6.3e-30	104.0	hAT-like transposase, RNase-H fold
`XP_057796288.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	264	348	3.3e-24	85.2	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009097305.1
GTGCACACATCCTGAACCTTATGGTTCAGGAAGGACTTTCAAGGATTGCTTACATTATTGAAGACATACATGAAAGTGTGCTCTTCATCAATTACAATGAGGCAAGACTTCGAGCATTCTCTGAAATTGTGCAGCAGTTACAACTACCACATCGGAAGCTTGTTCTCGAGTGCAAAACAAGATGGAATTCCACATATGAAATGCTGTCATCTGCCATCTTGTTCAAAGAGGTGTTCCCAAGATATCAAGATAGAGAGCCA...

XM_057940305.1
GGTGTTGTGCACACATCCTGAACCTTATGGTTCAGGAAGGACTTTCAAGGATTGCTTACATTATTGAAGACATACATGAAAGTGTGCTCTTCATCAATTACAATGAGGCAAGACTTCGAGCATTCTCTGAAATTGTGCAGCAGTTACAACTACCACATCGGAAGCTTGTTCTCGAGTGCAAAACAAGATGGAATTCCACATATGAAATGCTGTCATCTGCCATCTTGTTCAAAGAGGTGTTCCCAAGATATCAAGATAGA...

CDS

2 records

下载 CDS FASTA

LOC131012376
ATGGTTCAGGAAGGACTTTCAAGGATTGCTTACATTATTGAAGACATACATGAAAGTGTGCTCTTCATCAATTACAATGAGGCAAGACTTCGAGCATTCTCTGAAATTGTGCAGCAGTTACAACTACCACATCGGAAGCTTGTTCTCGAGTGCAAAACAAGATGGAATTCCACATATGAAATGCTGTCATCTGCCATCTTGTTCAAAGAGGTGTTCCCAAGATATCAAGATAGAGAGCCACGATATACTTGTTGTCCAAG...

Protein

2 records

下载 Protein FASTA

XP_057796287.1
MVQEGLSRIAYIIEDIHESVLFINYNEARLRAFSEIVQQLQLPHRKLVLECKTRWNSTYEMLSSAILFKEVFPRYQDREPRYTCCPSNEDWVMVEKVCTILEVFDSATRIISGSEYPTSNLFLNEVYRIKVLLDKLHGDETEAPFIHDMVGAMKTKFDKYWGECNLLMAIAAILDPRCKMTVIEYCFPKMYSKEEAREKIKKVKDALYELYDEYVADMYSDTSTQSEQIIDNTDRRSGVKVASGWSEFIQHVKSAQTSKP...

XP_057796288.1
MVQEGLSRIAYIIEDIHESVLFINYNEARLRAFSEIVQQLQLPHRKLVLECKTRWNSTYEMLSSAILFKEVFPRYQDREPRYTCCPSNEDWVMVEKVCTILEVFDSATRIISGSEYPTSNLFLNEVYRIKVLLDKLHGDETEAPFIHDMVGAMKTKFDKYWGECNLLMAIAAILDPRCKMTVIEYCFPKMYSKEEAREKIKKVKDALYELYDEYVADMYSDTSTQSEQIIDNTDRRSGVKVASGWSEFIQHVKSAQTSKP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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