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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G002214

染色体: Chr02 坐标: 39376758-39379132 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G002214
名称SmilChr02G002214
描述equilibrative nucleotide transporter 3-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向39376758 - 39379132 / +

ID 对照

NCBI Gene IDLOC131012392
GeneID131012392
locus_tag-
NCBI NameLOC131012392
原始查询LOC131012392

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述equilibrative nucleotide transporter 3-like
产物equilibrative nucleotide transporter 3-like
ArabidopsisAT4G05120 (FUR1)
Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825857]
identity=66.7; qcov=0.976; evalue=0; confidence=high
RiceOs07g0557100
-
identity=65.6; qcov=0.96; evalue=0; confidence=high
GOGO:0005337 (nucleoside transmembrane transporter activity); GO:0005886 (plasma membrane); GO:1901642 (nucleoside transmembrane transport)
KEGGsmil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
PfamPF01733 (Nucleoside_tran)
InterPro-
eggNOG-
NRGeneID:131012392

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole membrane 液泡膜 1.00000 XP_057796316.1
2 Vacuole 液泡 1.00000 XP_057796317.1
3 Cell membrane 细胞膜 0.40000 XP_057796316.1
4 Nucleus 细胞核 0.00000 XP_057796316.1
5 Chromosome 染色体 0.00000 XP_057796316.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:39377044 T TTC 2bp_insertion frameshift_variant 128 A10,A14,A15,A18,A2,A20,A22,A24,A3,A5,A7,B1,B10,B100,B102,B106,B113,B114,B115,B120,B122,B126,B128,B129,B13,B131,B132,B133,B134,B135,B14,B140,B15,B16,B17,B2,B20,B24,B25,B26,B27,B28,B29,B31,B32,B34,B37,B38,B39,B42,B43,B46,B53,B58,B6,B62,B63,B66,B68,B69,B70,B71,B73,B75,B77,B78,B79,B83,B85,B87,B90,B91,B92,B98,C11,C16,C18,C19,C21,C24,C25,C28,C29,C3,C30,C31,C32,C34,C35,C36,C40,C41,C42,C43,C44,C46,C48,C5,C50,C52,C55,C56,C6,C60,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C73,C76,C78,C80,C81,C82,C83,C87,C9,D11,D6,D7,D9
Chr2:39377060 C CTT 2bp_insertion frameshift_variant 25 A8,B1,B12,B136,B138,B30,B39,B48,B49,B60,B79,B90,B92,B95,B97,C13,C21,C33,C37,C53,C54,C59,C73,C84,D4
Chr2:39377305 C T EMS_canonical_SNV stop_gained 3 B59,C1,C59
Chr2:39377305 C T EMS_canonical_SNV CDS_variant 3 B59,C1,C59
Chr2:39377498 C T EMS_canonical_SNV CDS_variant 1 C53
Chr2:39377507 C T EMS_canonical_SNV CDS_variant 2 B104,B95
Chr2:39377622 CG C 1bp_deletion frameshift_variant 4 B111,B114,B134,D9
Chr2:39377622 CG C 1bp_deletion CDS_variant 4 B111,B114,B134,D9
Chr2:39377740 C T EMS_canonical_SNV CDS_variant 4 B127,B135,B95,C41
Chr2:39377860 G A EMS_canonical_SNV CDS_variant 1 B109
Chr2:39377871 G GC 1bp_insertion frameshift_variant 2 B103,C1
Chr2:39377871 G GC 1bp_insertion CDS_variant 2 B103,C1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796316.1
443 aa
N
1
222
443
Nucleoside_tran
C
PF01733 Nucleoside_tran 142-436 aa
XP_057796317.1
442 aa
N
1
221
442
Nucleoside_tran
C
PF01733 Nucleoside_tran 141-435 aa
XP_057796319.1
438 aa
N
1
219
438
Nucleoside_tran
C
PF01733 Nucleoside_tran 142-431 aa
XP_057796320.1
437 aa
N
1
218
437
Nucleoside_tran
C
PF01733 Nucleoside_tran 141-430 aa
XP_057796321.1
426 aa
N
1
213
426
Nucleoside_tran
C
PF01733 Nucleoside_tran 125-419 aa
XP_057796322.1
426 aa
N
1
213
426
Nucleoside_tran
C
PF01733 Nucleoside_tran 125-419 aa
XP_057796323.1
425 aa
N
1
212
425
Nucleoside_tran
C
PF01733 Nucleoside_tran 124-418 aa
XP_057796324.1
425 aa
N
1
212
425
Nucleoside_tran
C
PF01733 Nucleoside_tran 124-418 aa
XP_057796325.1
421 aa
N
1
210
421
Nucleoside_tran
C
PF01733 Nucleoside_tran 125-414 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796316.1 Pfam PF01733 Nucleoside_tran Family 142 436 2.4e-28 100.1 Nucleoside transporter
XP_057796317.1 Pfam PF01733 Nucleoside_tran Family 141 435 2.4e-28 100.1 Nucleoside transporter
XP_057796319.1 Pfam PF01733 Nucleoside_tran Family 142 431 9.1e-28 98.2 Nucleoside transporter
XP_057796320.1 Pfam PF01733 Nucleoside_tran Family 141 430 9e-28 98.3 Nucleoside transporter
XP_057796321.1 Pfam PF01733 Nucleoside_tran Family 125 419 1.2e-28 101.2 Nucleoside transporter
XP_057796322.1 Pfam PF01733 Nucleoside_tran Family 125 419 1.2e-28 101.2 Nucleoside transporter
XP_057796323.1 Pfam PF01733 Nucleoside_tran Family 124 418 2.1e-28 100.3 Nucleoside transporter
XP_057796324.1 Pfam PF01733 Nucleoside_tran Family 124 418 2.1e-28 100.3 Nucleoside transporter
XP_057796325.1 Pfam PF01733 Nucleoside_tran Family 125 414 4.2e-28 99.4 Nucleoside transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XM_057940336.1
AATCAGGGAATAGTTCATTGACAAAAATTGGATAGTGAGAACATCATGTGACGTTTTTTTTGTTTTAAACACACGATAAAAAATGAGTCACAAACAGTTTGAGAAGAGTGGACTTGAGATAATAGACATTTTTCCAATTTGTAGGCTGAGGATATAATCATTCAGGACTCTTGTGTTCACTTCAACGAAGTTTCTCTTATTTTTTTATGCATAAAGCGATTCTCTCTCTCTCTCTCGGTTTGTTTAGAGGAGCAGTAATG...
XM_057940334.1
AATCAGGGAATAGTTCATTGACAAAAATTGGATAGTGAGAACATCATGTGACGTTTTTTTTGTTTTAAACACACGATAAAAAATGAGTCACAAACAGTTTGAGAAGAGTGGACTTGAGATAATAGACATTTTTCCAATTTGTAGGCTGAGGATATAATCATTCAGGACTCTTGTGTTCACTTCAACGAAGTTTCTCTTATTTTTTTATGCATAAAGCGATTCTCTCTCTCTCTCTCGGTTTGTTTAGAGGAGCAGTAATG...

CDS

9 records

下载 CDS FASTA
LOC131012392
ATGCATAAAGCGATTCTCTCTCTCTCTCTCGGTTTGTTTAGAGGAGCAGTAATGAGCAATGGAGATTCAAGCATCGTCTCAACTCCTATCAGGATTGAGCAGGGGAAGTTGAAGGCAATGGTGGTTTGTTGGTTTCTTGGTCTGGGATGCCTCATTTCATGGAATAGCATGTTGACAATTGGAGACTATTACTATCAAATTTTCCCCAGTTACCATCCTGCCAGAGTACTCACTCTGGTCTACCAGCCTTTCGCCCTCGG...
LOC131012392
ATGCATAAAGCGATTCTCTCTCTCTCTCTCGGTTTGTTTAGAGGAGCAGTAATGAGCAATGGAGATTCAAGCATCGTCTCAACTCCTATCAGGATTGAGCAGGGGAAGTTGAAGGCAATGGTGGTTTGTTGGTTTCTTGGTCTGGGATGCCTCATTTCATGGAATAGCATGTTGACAATTGGAGACTATTACTATCAAATTTTCCCCAGTTACCATCCTGCCAGAGTACTCACTCTGGTCTACCAGCCTTTCGCCCTCGG...

Protein

9 records

下载 Protein FASTA
XP_057796316.1
MHKAILSLSLGLFRGAVMSNGDSSIVSTPIRIEQGKLKAMVVCWFLGLGCLISWNSMLTIGDYYYQIFPSYHPARVLTLVYQPFALGSIAILSYHEANIDTRKRNMFGYALFCFSTLGLLLIDVATSGGGGIGNYIGVCAFVAAFGVADAHVQGGMTGDLSFMSPHLMQSFLAGLSASGALVAGLRLVTKAVFDQTDNGLRKGVILFLAISIFCEFLCLLLYAFVFGKLPIVKHLRKKAASEGSITVSADLVAVGIKTTQ...
XP_057796317.1
MHKAILSLSLGLFRGAVMSNGDSSIVSTPIRIEGKLKAMVVCWFLGLGCLISWNSMLTIGDYYYQIFPSYHPARVLTLVYQPFALGSIAILSYHEANIDTRKRNMFGYALFCFSTLGLLLIDVATSGGGGIGNYIGVCAFVAAFGVADAHVQGGMTGDLSFMSPHLMQSFLAGLSASGALVAGLRLVTKAVFDQTDNGLRKGVILFLAISIFCEFLCLLLYAFVFGKLPIVKHLRKKAASEGSITVSADLVAVGIKTTQR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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