Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002220`

染色体: Chr02 坐标: 39474607-39477573 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002220`
名称	SmilChr02G002220
描述	vesicle-associated protein 4-1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	39474607 - 39477573 / `+`

ID 对照

NCBI Gene ID	`LOC131012398`
GeneID	`131012398`
locus_tag	`-`
NCBI Name	`LOC131012398`
原始查询	`LOC131012398`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vesicle-associated protein 4-1
产物	vesicle-associated protein 4-1
Arabidopsis	`AT4G21450` (AT4G21450) PapD-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826300] identity=66; qcov=0.984; evalue=9.71e-137; confidence=high
Rice	`Os08g0141300` - identity=85.3; qcov=0.603; evalue=1.2e-107; confidence=high
GO	GO:0005789 (endoplasmic reticulum membrane); GO:0005886 (plasma membrane); GO:0061817 (GO:0061817); GO:0090158 (endoplasmic reticulum membrane organization)
KEGG	-
Pfam	PF00635 (Motile_Sperm)
InterPro	-
eggNOG	-
NR	GeneID:131012398

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057796337.1`
2	Cell membrane	细胞膜	0.80000	`XP_057796337.1`
3	Endoplasmic reticulum	内质网	0.40000	`XP_057796336.1`
4	Cytoplasm	细胞质	0.20000	`XP_057796337.1`
5	Nucleus	细胞核	0.00000	`XP_057796336.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:39474825`	`GAC`	`G`	2bp_deletion	frameshift_variant	3	B47,B59,D2
`Chr2:39474825`	`GAC`	`G`	2bp_deletion	CDS_variant	3	B47,B59,D2
`Chr2:39475013`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B3,B72,B93,C15
`Chr2:39475089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,B113,C16,C18
`Chr2:39475094`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,B87
`Chr2:39475114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr2:39475160`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	C53
`Chr2:39475160`	`TCC`	`T`	2bp_deletion	CDS_variant	1	C53
`Chr2:39475181`	`T`	`TC`	1bp_insertion	frameshift_variant	1	C29
`Chr2:39475181`	`T`	`TC`	1bp_insertion	CDS_variant	1	C29
`Chr2:39477238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796336.1

333 aa

166

333

Motile_Sperm

PF00635 Motile_Sperm 118-227 aa

XP_057796337.1

305 aa

152

305

Motile_Sperm

PF00635 Motile_Sperm 118-227 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796336.1`	Pfam	`PF00635`	Motile_Sperm	Domain	118	227	2e-22	79.8	MSP (Major sperm protein) domain
`XP_057796337.1`	Pfam	`PF00635`	Motile_Sperm	Domain	118	227	1.7e-22	80.1	MSP (Major sperm protein) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940354.1
CCGAACACATCTTTAAGATTGTACAATTATTTTAATATACAGTGATTCCCCTTTTATTTAATTTTTACGACGATAAATCTACCTGAGTTCAAAAATGAACTAATGAGAATTGAGAGTAGAAAACTCAAATATTAGTTTTAAAAAAGAAAATGAAAGAAAAGAAAAGCCCGAAATAATATAAATTAAAGACAATGCGAAAAAGAAAGAGGAAATTTGGCGACAACACCTGTTCAAAAAGTCACTCTTGCAACACCAAAACC...

XM_057940353.1
AAAATGAACTAATGAGAATTGAGAGTAGAAAACTCAAATATTAGTTTTAAAAAAGAAAATGAAAGAAAAGAAAAGCCCGAAATAATATAAATTAAAGACAATGCGAAAAAGAAAGAGGAAATTTGGCGACAACACCTGTTCAAAAAGTCACTCTTGCAACACCAAAACCCCAAAGCGACGACGTTGCGCGCTCCCGGCGGCGGAATCAGCCATGGCGCTCGTGGAGGAGAGATCGGCGTCCTCCGATGGAAAAGTCTGGG...

CDS

2 records

下载 CDS FASTA

LOC131012398
ATGCGAAAAAGAAAGAGGAAATTTGGCGACAACACCTGTTCAAAAAGTCACTCTTGCAACACCAAAACCCCAAAGCGACGACGTTGCGCGCTCCCGGCGGCGGAATCAGCCATGGCGCTCGTGGAGGAGAGATCGGCGTCCTCCGATGGAAAAGTCTGGGGGCTATTCAAGCTCCCTTTCCGGAATTCCCATAACACGACGTCGTCGTCATCGGCGTCCGCAAATTTCGCTCATTATCAGCAGAATTATGGTCACGGAAA...

Protein

2 records

下载 Protein FASTA

XP_057796336.1
MRKRKRKFGDNTCSKSHSCNTKTPKRRRCALPAAESAMALVEERSASSDGKVWGLFKLPFRNSHNTTSSSSASANFAHYQQNYGHGNGNAQFPVEGSAAQATSVSSVARSLLPARRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEPPENNEKPMDQKSTVKFKIMSLKVKGPTDYIPELFDEQKDEVAVEQILRVVFLDAERPSPALDKLKRQLAEAEA...

XP_057796337.1
MRKRKRKFGDNTCSKSHSCNTKTPKRRRCALPAAESAMALVEERSASSDGKVWGLFKLPFRNSHNTTSSSSASANFAHYQQNYGHGNGNAQFPVEGSAAQATSVSSVARSLLPARRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEPPENNEKPMDQKSTVKFKIMSLKVKGPTDYIPELFDEQKDEVAVEQILRVVFLDAERPSPALDKLKRQLAEAEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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