当前解析结果
SmilChr02G002237| 统一新 Gene ID | SmilChr02G002237 |
|---|---|
| 名称 | SmilChr02G002237 |
| 描述 | bifunctional sesquiterpene synthase 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 39715606 - 39720703 / - |
| NCBI Gene ID | LOC131012416 |
|---|---|
| GeneID | 131012416 |
| locus_tag | - |
| NCBI Name | LOC131012416 |
| 原始查询 | LOC131012416 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | bifunctional sesquiterpene synthase 1-like |
| 产物 | bifunctional sesquiterpene synthase 1-like |
| Arabidopsis | AT5G23960 (TPS21)terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=35; qcov=0.957; evalue=8.23e-105; confidence=medium |
| Rice | Os08g0139700 (OsTPS29)- identity=38; qcov=0.968; evalue=3.01e-114; confidence=medium |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process) |
| KEGG | smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012416 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057796351.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057796351.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796351.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796351.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796351.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:39715795 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr2:39715849 |
A |
AT |
1bp_insertion | frameshift_variant | 50 | A16,A18,A21,A23,A25,A3,A7,A9,B10,B104,B107,B12,B126,B127,B128,B136,B2,B20,B3,B31,B32,B37,B47,B53,B57,B58,B65,B7,B71,B72,B89,B98,C13,C20,C24,C26,C29,C30,C35,C51,C53,C55,C64,C66,C7,C71,C72,C74,C80,C83 |
Chr2:39715881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C80 |
Chr2:39715882 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,C80 |
Chr2:39718734 |
AGC |
A |
2bp_deletion | frameshift_variant | 1 | C29 |
Chr2:39718734 |
AGC |
A |
2bp_deletion | CDS_variant | 1 | C29 |
Chr2:39718784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr2:39719694 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A18,B25,B78,C85 |
Chr2:39719694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B25,B78,C85 |
Chr2:39719867 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr2:39719925 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr2:39720569 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796351.1PF01397
Terpene_synth 23-202 aa
PF03936
Terpene_synth_C 262-498 aa
PF19086
Terpene_syn_C_2 300-498 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796351.1 |
Pfam | PF01397 |
Terpene_synth | Repeat | 23 | 202 | 1.4e-39 | 136.5 | Terpene synthase, N-terminal domain |
XP_057796351.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 262 | 498 | 7e-88 | 294.7 | Terpene synthase family, metal binding domain |
XP_057796351.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 300 | 498 | 4.6e-52 | 177.4 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。