Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G002242`

染色体: Chr02 坐标: 39798509-39800955 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G002242`
名称	SmilChr02G002242
描述	uncharacterized SmilChr02G002242
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	39798509 - 39800955 / `-`

ID 对照

NCBI Gene ID	`LOC131012420`
GeneID	`131012420`
locus_tag	`-`
NCBI Name	`LOC131012420`
原始查询	`LOC131012420`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ribosomal RNA-processing protein [Source:NCBI gene (formerly Entrezgene);Acc:837665]; symbol=AT1G11240; hit=AT1G11240; species=arabidopsis; confidence=medium
产物	ribosomal RNA-processing protein [Source:NCBI gene (formerly Entrezgene);Acc:837665]; symbol=AT1G11240; hit=AT1G11240; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G11240` (AT1G11240) ribosomal RNA-processing protein [Source:NCBI gene (formerly Entrezgene);Acc:837665] identity=53.7; qcov=0.894; evalue=2.14e-35; confidence=medium
Rice	`Os03g0353500` - identity=46.7; qcov=0.616; evalue=2.71e-19; confidence=low
GO	GO:0003723 (RNA binding); GO:0005730 (nucleolus)
KEGG	-
Pfam	PF09805 (Nop25)
InterPro	-
eggNOG	-
NR	GeneID:131012420

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796355.1`
2	Nucleolus	核仁	1.00000	`XP_057796355.1`
3	Nucleolus rim	Nucleolus rim	0.80000	`XP_057796355.1`
4	Nucleoplasm	核质	0.80000	`XP_057796355.1`
5	Nucleolar fibrillar center	Nucleolar fibrillar center	0.60000	`XP_057796355.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:39798842`	`TTA`	`T`	2bp_deletion	frameshift_variant	1	B72
`Chr2:39798842`	`TTA`	`T`	2bp_deletion	CDS_variant	1	B72
`Chr2:39798904`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr2:39798965`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr2:39799504`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr2:39800410`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B130,B84,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796355.1

198 aa

198

Nop25

PF09805 Nop25 20-100 aa

XP_057796356.1

198 aa

198

Nop25

PF09805 Nop25 20-100 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796355.1`	Pfam	`PF09805`	Nop25	Family	20	100	1.9e-13	51.8	Nucleolar protein 12 (25kDa)
`XP_057796356.1`	Pfam	`PF09805`	Nop25	Family	20	100	1.9e-13	51.8	Nucleolar protein 12 (25kDa)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940372.1
ATAATTTAGAACCCTAGTTTCACTTCATTCAAAAAACGCAGGCGCCGCCCATCTCGATCTCCCTTCTCTCCGTCCGGCTTCTCCACTCATCTCGCCAGCCGGCATATCGTCGTTCGGCGTCCACCGTCGCCGCACCCGCGAGTTCAGCGTCCGCGAGTTCAGTCAGAACACTACACCATCGCCGCGAGTTCAGCCACCGTTCGCCGCGAGTTCAGCCACCATCGTGACATTTTCTGAAGGAACGAATAAAGTCAGGGACA...

XM_057940373.1
ATAATTTAGAACCCTAGTTTCACTTCATTCAAAAAACGCAGGCGCCGCCCATCTCGATCTCCCTTCTCTCCGTCCGGCTTCTCCACTCATCTCGCCAGCCGGCATATCGTCGTTCGGCGTCCACCGTCGCCGCACCCGCGAGTTCAGCGTCCGCGAGTTCAGTCAGAACACTACACCATCGCCGCGAGTTCAGCCACCGTTCGCCGCGAGTTCAGCCACCATCGTGACATTTTCTGAAGGAACGAGTTAATACGTGCTGC...

CDS

2 records

下载 CDS FASTA

LOC131012420
ATGGATGCGGCGGCGGCGGAGGAAGGCGGAGCACCGCTCAGAACTCGCCATATTAAAAAGAGAGCTCTCAGGAACAAATCACTCTCTGTATCTTTCGACGAAAAAGATCTCAAAGATTTTGTGGGTGGTTTTCACAAGAGGAAGAAGAAGAGGAGAAAAGAGGCCTTGCAGCAGCAAGAAGAAGCTGGACGCCGCAAGCGCATTGAGCTGCGCAAAAAGCGAAAAATGGAAAGAGAATTTGTTATGTCTGGCGGAGCTCC...

Protein

2 records

下载 Protein FASTA

XP_057796355.1
MDAAAAEEGGAPLRTRHIKKRALRNKSLSVSFDEKDLKDFVGGFHKRKKKRRKEALQQQEEAGRRKRIELRKKRKMEREFVMSGGAPTDSGAAIAKSDEELEHEEDSEPVASVSGTMMYDNDDVQVIVTTSEISRDEVLPADKSEVGRAPSMEGSEMSKQKTPVIRKKQLKKAPMKRSRPKTQRKRDKRKGNKKEKRH

XP_057796356.1
MDAAAAEEGGAPLRTRHIKKRALRNKSLSVSFDEKDLKDFVGGFHKRKKKRRKEALQQQEEAGRRKRIELRKKRKMEREFVMSGGAPTDSGAAIAKSDEELEHEEDSEPVASVSGTMMYDNDDVQVIVTTSEISRDEVLPADKSEVGRAPSMEGSEMSKQKTPVIRKKQLKKAPMKRSRPKTQRKRDKRKGNKKEKRH

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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