Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G001759`

染色体: Chr02 坐标: 32344077-32354199 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G001759`
名称	SmilChr02G001759
描述	uncharacterized SmilChr02G001759
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	32344077 - 32354199 / `+`

ID 对照

NCBI Gene ID	`LOC131012432`
GeneID	`131012432`
locus_tag	`-`
NCBI Name	`LOC131012432`
原始查询	`LOC131012432`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820743]; symbol=AT3G15120; hit=AT3G15120; species=arabidopsis; confidence=high
产物	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820743]; symbol=AT3G15120; hit=AT3G15120; species=arabidopsis; confidence=high
Arabidopsis	`AT3G15120` (AT3G15120) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820743] identity=59.3; qcov=0.604; evalue=0; confidence=high
Rice	`Os01g0668300` - identity=29.9; qcov=0.528; evalue=7.01e-102; confidence=low
GO	GO:0003682 (chromatin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0016887 (ATP hydrolysis activity); GO:0042393 (histone binding); GO:0045944 (positive regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF00004 (AAA); PF13771 (zf-HC5HC2H); PF13832 (zf-HC5HC2H_2); PF17862 (AAA_lid_3)
InterPro	-
eggNOG	-
NR	GeneID:131012432

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057796365.1`
2	Cytosol	细胞质基质	0.20000	`XP_057796365.1`
3	Chromosome	染色体	0.00000	`XP_057796365.1`
4	Centromere	着丝粒	0.00000	`XP_057796365.1`
5	Chromatin	染色质	0.00000	`XP_057796365.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:32344873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B72,C71
`Chr2:32345063`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr2:32345275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr2:32345288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B46,B63,B73,B83
`Chr2:32345474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr2:32345537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,B32,B37,B6,C63
`Chr2:32345747`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr2:32347132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B96
`Chr2:32347175`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr2:32347431`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr2:32348479`	`G`	`A`	EMS_canonical_SNV	stop_gained	6	A8,B28,C11,C15,C32,C56
`Chr2:32348485`	`G`	`GAT`	2bp_insertion	frameshift_variant	1	C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796365.1

1834 aa

917

1834

zf-HC5HC2H_2

zf-HC5HC2H

AAA

AAA_lid_3

PF13832 zf-HC5HC2H_2 462-535 aa PF13771 zf-HC5HC2H 465-544 aa PF00004 AAA 670-805 aa PF17862 AAA_lid_3 831-863 aa

XP_057796366.1

1834 aa

917

1834

zf-HC5HC2H_2

zf-HC5HC2H

AAA

AAA_lid_3

PF13832 zf-HC5HC2H_2 462-535 aa PF13771 zf-HC5HC2H 465-544 aa PF00004 AAA 670-805 aa PF17862 AAA_lid_3 831-863 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796365.1`	Pfam	`PF13832`	zf-HC5HC2H_2	Domain	462	535	1.4e-08	35.6	PHD-zinc-finger like domain
`XP_057796365.1`	Pfam	`PF13771`	zf-HC5HC2H	Domain	465	544	2.9e-11	44.1	PHD-like zinc-binding domain
`XP_057796365.1`	Pfam	`PF00004`	AAA	Domain	670	805	3.7e-38	131.7	ATPase family associated with various cellular activities (AAA)
`XP_057796365.1`	Pfam	`PF17862`	AAA_lid_3	Domain	831	863	4.3e-08	33.3	AAA+ lid domain
`XP_057796366.1`	Pfam	`PF13832`	zf-HC5HC2H_2	Domain	462	535	1.4e-08	35.6	PHD-zinc-finger like domain
`XP_057796366.1`	Pfam	`PF13771`	zf-HC5HC2H	Domain	465	544	2.9e-11	44.1	PHD-like zinc-binding domain
`XP_057796366.1`	Pfam	`PF00004`	AAA	Domain	670	805	3.7e-38	131.7	ATPase family associated with various cellular activities (AAA)
`XP_057796366.1`	Pfam	`PF17862`	AAA_lid_3	Domain	831	863	4.3e-08	33.3	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940382.1
TTTTTTCTCAATACCTCCGCCCCAAAGTAGTCTTCTAAAACAGTAGACAAAAAGCCCTAAACCAATTAGCAGCGGAGGAGGAAAGAAAATCGGAATTAATTTGCAGGATTTTATTTTATTGCCGGAAAATCTCAGTATCAATTGCAGAAAATTATGTTTGCGCGATTAAAATCGGCTGAAATCTGGTATTTTTAGGGTTCCTTTTTCTTTTTGGTGTGTCTACTGTGCATGATCCGTTATCCAAGGTCAGTCTTTCGTCG...

XM_057940383.1
TTTTTTCTCAATACCTCCGCCCCAAAGTAGTCTTCTAAAACAGTAGACAAAAAGCCCTAAACCAATTAGCAGCGGAGGAGGAAAGAAAATCGGAATTAATTTGCAGGATTTTATTTTATTGCCGGAAAATCTCAGTATCAATTGCAGAAAATTATGTTTGCGCGATTAAAATCGGCTGAAATCTGATTCTCTGAAGCTCCTTTCTGAAGAAAAAAGGGGAATTAATTGTTGGATTTAACGTCTGATGTGTGGGGAGGATT...

CDS

2 records

下载 CDS FASTA

LOC131012432
ATGCGATTATCGCGGTCGGACTCAGTTGTGAAGAGAAGGAAAGATCAGAAGCTCAGGAATAAGTTTAAGGGGAAGAAGAAGCACAAGAAATTAGATGCTATTTATGAAAAAGGTTACAATAAGAGCCATAGAGGGGTCCCAAAGGTTGAGTCAAGTGAGTTTAATAATGAACAGAATGAACTTGAACTCCGGAGGAGCAGTAGGGCTCGTAAAGCGCCTATGCTGCTCGATTCATCACCTCTTCCACCTAAAAAGCGAAG...

Protein

2 records

下载 Protein FASTA

XP_057796365.1
MRLSRSDSVVKRRKDQKLRNKFKGKKKHKKLDAIYEKGYNKSHRGVPKVESSEFNNEQNELELRRSSRARKAPMLLDSSPLPPKKRRKVDNCVASSVEKVKRVDRRQCETPCSSSSDGESDGWRSRLRSRQKSRGFSGRVREDLPLKGKRKLFQDLDRLRDEQEPQFYKKKEHLMGEKSTVVKSKRPGRIKASNVLENDNQEVDLESGSEDGKQKNKDEILEVIDEAEGSSLENKLECTNEIEVDCNMASQLAEGEETAI...

XP_057796366.1
MRLSRSDSVVKRRKDQKLRNKFKGKKKHKKLDAIYEKGYNKSHRGVPKVESSEFNNEQNELELRRSSRARKAPMLLDSSPLPPKKRRKVDNCVASSVEKVKRVDRRQCETPCSSSSDGESDGWRSRLRSRQKSRGFSGRVREDLPLKGKRKLFQDLDRLRDEQEPQFYKKKEHLMGEKSTVVKSKRPGRIKASNVLENDNQEVDLESGSEDGKQKNKDEILEVIDEAEGSSLENKLECTNEIEVDCNMASQLAEGEETAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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