当前解析结果
SmilChr02G001764| 统一新 Gene ID | SmilChr02G001764 |
|---|---|
| 名称 | SmilChr02G001764 |
| 描述 | uncharacterized SmilChr02G001764 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 32375706 - 32377534 / + |
| NCBI Gene ID | LOC131012435 |
|---|---|
| GeneID | 131012435 |
| locus_tag | - |
| NCBI Name | LOC131012435 |
| 原始查询 | LOC131012435 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820741]; symbol=AT3G15110; hit=AT3G15110; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820741]; symbol=AT3G15110; hit=AT3G15110; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G15110 (AT3G15110)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:820741] identity=46.5; qcov=0.654; evalue=1.77e-43; confidence=medium |
| Rice | Os02g0307800- identity=43.8; qcov=0.735; evalue=5.37e-31; confidence=medium |
| GO | GO:0009535 (chloroplast thylakoid membrane) |
| KEGG | - |
| Pfam | PF11282 (DUF3082) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012435 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057796369.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057796369.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.80000 | XP_057796369.1 |
| 4 | Chloroplast thylakoid membrane | 类囊体膜 | 0.20000 | XP_057796369.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057796369.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:32376053 |
CA |
C |
1bp_deletion | frameshift_variant | 115 | A10,A14,A15,A18,A2,A20,A22,A24,A4,A5,A7,A9,B1,B106,B107,B108,B109,B110,B112,B115,B117,B118,B12,B122,B123,B126,B127,B131,B133,B136,B137,B138,B14,B140,B18,B28,B3,B30,B31,B32,B33,B35,B36,B37,B41,B45,B47,B48,B51,B55,B56,B57,B58,B59,B6,B61,B62,B65,B67,B7,B70,B72,B77,B78,B79,B83,B84,B88,B89,B90,B92,B94,B95,B96,C13,C14,C15,C16,C17,C18,C19,C21,C23,C26,C28,C3,C30,C34,C36,C39,C4,C40,C42,C43,C45,C5,C51,C53,C54,C56,C61,C63,C64,C65,C66,C73,C77,C82,C86,D1,D10,D2,D4,D7,D9 |
Chr2:32376061 |
T |
TA |
1bp_insertion | frameshift_variant | 18 | A5,B120,B135,B137,B16,B32,B66,B75,B76,B91,B94,C34,C56,C60,C81,C86,D11,D6 |
Chr2:32376114 |
AC |
A |
1bp_deletion | frameshift_variant | 84 | A11,A19,A24,A25,B1,B105,B106,B107,B108,B110,B111,B112,B117,B122,B124,B125,B128,B129,B13,B131,B134,B14,B17,B21,B22,B29,B33,B35,B41,B42,B43,B45,B47,B49,B55,B57,B58,B59,B6,B60,B61,B64,B66,B69,B72,B73,B74,B75,B78,B79,B80,B81,B9,B91,B93,B95,B97,C11,C15,C18,C20,C22,C23,C25,C29,C31,C34,C4,C40,C41,C46,C47,C52,C61,C63,C67,C69,C71,C77,C81,C82,C87,D2,D9 |
Chr2:32376117 |
C |
CCA |
2bp_insertion | frameshift_variant | 73 | A11,A19,A24,A25,B1,B105,B106,B107,B108,B111,B112,B117,B122,B124,B125,B128,B129,B13,B131,B134,B14,B17,B21,B22,B29,B35,B42,B43,B45,B47,B49,B55,B57,B58,B6,B60,B64,B66,B69,B72,B73,B74,B79,B80,B81,B9,B91,B95,B97,C11,C15,C20,C22,C23,C25,C29,C31,C34,C4,C40,C46,C47,C52,C63,C67,C69,C71,C77,C81,C82,C87,D2,D9 |
Chr2:32376196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr2:32376323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr2:32377137 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A9,B103,C1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796369.1PF11282
DUF3082 176-250 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796369.1 |
Pfam | PF11282 |
DUF3082 | Family | 176 | 250 | 1.9e-27 | 96.0 | Protein of unknown function (DUF3082) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。