Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004487`

染色体: Chr02 坐标: 67375579-67377100 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004487`
名称	SmilChr02G004487
描述	uncharacterized SmilChr02G004487
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	67375579 - 67377100 / `-`

ID 对照

NCBI Gene ID	`LOC131012440`
GeneID	`131012440`
locus_tag	`-`
NCBI Name	`LOC131012440`
原始查询	`LOC131012440`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	confidence=no_hit
产物	confidence=no_hit
Arabidopsis	`-` -
Rice	`-` -
GO	-
KEGG	-
Pfam	PF10950 (Organ_specific)
InterPro	-
eggNOG	-
NR	GeneID:131012440

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell wall	细胞壁	0.80000	`XP_057796378.1`
2	Secreted	分泌到胞外	0.40000	`XP_057796378.1`
3	Nucleus	细胞核	0.00000	`XP_057796378.1`
4	Chromosome	染色体	0.00000	`XP_057796378.1`
5	Centromere	着丝粒	0.00000	`XP_057796378.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:67375765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B36,B82,B86
`Chr2:67375863`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B9,C54,C86
`Chr2:67375942`	`T`	`TGC`	2bp_insertion	frameshift_variant	1	B130
`Chr2:67375942`	`T`	`TGC`	2bp_insertion	CDS_variant	1	B130
`Chr2:67376024`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr2:67376033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B66
`Chr2:67376176`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr2:67376182`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C54,C86
`Chr2:67376236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B68,C40
`Chr2:67376257`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B129,B68,B9,C54,C86
`Chr2:67376265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr2:67376333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B20,C37,C64,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796378.1

383 aa

192

383

Organ_specific

PF10950 Organ_specific 22-143 aa PF10950 Organ_specific 147-193 aa PF10950 Organ_specific 173-218 aa PF10950 Organ_specific 199-243 aa PF10950 Organ_specific 249-318 aa PF10950 Organ_specific 280-347 aa PF10950 Organ_specific 326-372 aa

XP_057796379.1

350 aa

175

350

Organ_specific

PF10950 Organ_specific 47-110 aa PF10950 Organ_specific 88-135 aa PF10950 Organ_specific 114-160 aa PF10950 Organ_specific 140-185 aa PF10950 Organ_specific 166-210 aa PF10950 Organ_specific 216-285 aa PF10950 Organ_specific 247-314 aa PF10950 Organ_specific 293-339 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796378.1`	Pfam	`PF10950`	Organ_specific	Family	22	143	4.3e-94	311.9	Organ specific protein
`XP_057796378.1`	Pfam	`PF10950`	Organ_specific	Family	147	193	4.3e-94	311.9	Organ specific protein
`XP_057796378.1`	Pfam	`PF10950`	Organ_specific	Family	173	218	4.3e-94	311.9	Organ specific protein
`XP_057796378.1`	Pfam	`PF10950`	Organ_specific	Family	199	243	4.3e-94	311.9	Organ specific protein
`XP_057796378.1`	Pfam	`PF10950`	Organ_specific	Family	249	318	4.3e-94	311.9	Organ specific protein
`XP_057796378.1`	Pfam	`PF10950`	Organ_specific	Family	280	347	4.3e-94	311.9	Organ specific protein
`XP_057796378.1`	Pfam	`PF10950`	Organ_specific	Family	326	372	4.3e-94	311.9	Organ specific protein
`XP_057796379.1`	Pfam	`PF10950`	Organ_specific	Family	47	110	2.8e-97	322.2	Organ specific protein
`XP_057796379.1`	Pfam	`PF10950`	Organ_specific	Family	88	135	2.8e-97	322.2	Organ specific protein
`XP_057796379.1`	Pfam	`PF10950`	Organ_specific	Family	114	160	2.8e-97	322.2	Organ specific protein
`XP_057796379.1`	Pfam	`PF10950`	Organ_specific	Family	140	185	2.8e-97	322.2	Organ specific protein
`XP_057796379.1`	Pfam	`PF10950`	Organ_specific	Family	166	210	2.8e-97	322.2	Organ specific protein
`XP_057796379.1`	Pfam	`PF10950`	Organ_specific	Family	216	285	2.8e-97	322.2	Organ specific protein
`XP_057796379.1`	Pfam	`PF10950`	Organ_specific	Family	247	314	2.8e-97	322.2	Organ specific protein
`XP_057796379.1`	Pfam	`PF10950`	Organ_specific	Family	293	339	2.8e-97	322.2	Organ specific protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057940396.1
CTATTCTCAACTAACCAAGGGAGATTCAGATTCAGATTCAGATTCAAATTATAGCAATGAGATGCATCATAGCTAACATCCTCTTTCTTGCACTGATAGCTTGCGGTATCAATGCAAGAAAAGATGGAGGGGAATATTGGCAAGGTGTTGTGAAGGATGAGAGAATGGAAGAAAATGGGTGTCATACTTTGGGTTTTGTGAGAAACTTTGATCCGAGACCAAGCGCTACAGCCTATGTTGCTAATCTTAAGCCAAAACTA...

XM_057940395.1
CTATTCTCAACTAACCAAGGGAGATTCAGATTCAGATTCAGATTCAAATTATAGCAATGAGATGCATCATAGCTAACATCCTCTTTCTTGCACTGATAGCTTGCGGTATCAATGCAAGAAAAGATGGAGGGGAATATTGGCAAGGTGTTGTGAAGGATGAGAGAATGGAAGAAAATGGGTGTCATACTTTGGGTAAGTCATCAATCTTCGATGTCAAACCTAAATACGAGGAATCTTTTGCAAAGCAAAGGGCTAGCACC...

CDS

2 records

下载 CDS FASTA

LOC131012440
ATGAGATGCATCATAGCTAACATCCTCTTTCTTGCACTGATAGCTTGCGGTATCAATGCAAGAAAAGATGGAGGGGAATATTGGCAAGGTGTTGTGAAGGATGAGAGAATGGAAGAAAATGGGTGTCATACTTTGGGTTTTGTGAGAAACTTTGATCCGAGACCAAGCGCTACAGCCTATGTTGCTAATCTTAAGCCAAAACTAGAAAAATCTTTTGTGAGAGATTTTGAGCCAAGGCCTAGCACTACATCTTATGTTCA...

LOC131012440
ATGAGATGCATCATAGCTAACATCCTCTTTCTTGCACTGATAGCTTGCGGTATCAATGCAAGAAAAGATGGAGGGGAATATTGGCAAGGTGTTGTGAAGGATGAGAGAATGGAAGAAAATGGGTGTCATACTTTGGGTAAGTCATCAATCTTCGATGTCAAACCTAAATACGAGGAATCTTTTGCAAAGCAAAGGGCTAGCACCATGGCTCATACTGATGTCAATCATGATATAGGTTTTGTGAGAAACTTTGATCCGAG...

Protein

2 records

下载 Protein FASTA

XP_057796378.1
MRCIIANILFLALIACGINARKDGGEYWQGVVKDERMEENGCHTLGKSSIFDVKPKYEESFAKQRASTMAHTDVNHDIGFVRNFDPRPSATAYVANLKPKLEKSFVRDFEPRPSTTSYVQNLKPEDDKSFVRDFEPRPSATSYVGNLKPQDEKSFVRDFEPRPSATSYVGNLNPEDEKSFVRDFEPRPSATSYVGNHNPEDEKSFVRDFEPRPSATSYVGNLTPKDEKSFVRDFEPRPSATSYVENLKPENEKSFVREFE...

XP_057796379.1
MRCIIANILFLALIACGINARKDGGEYWQGVVKDERMEENGCHTLGFVRNFDPRPSATAYVANLKPKLEKSFVRDFEPRPSTTSYVQNLKPEDDKSFVRDFEPRPSATSYVGNLKPQDEKSFVRDFEPRPSATSYVGNLNPEDEKSFVRDFEPRPSATSYVGNHNPEDEKSFVRDFEPRPSATSYVGNLTPKDEKSFVRDFEPRPSATSYVENLKPENEKSFVREFEPRHSATSYVENLKPVNEKFFVRDFEPRPSATSY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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