Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000009`

染色体: Chr02 坐标: 70419-73585 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000009`
名称	SmilChr02G000009
描述	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	70419 - 73585 / `+`

ID 对照

NCBI Gene ID	`LOC131012447`
GeneID	`131012447`
locus_tag	`-`
NCBI Name	`LOC131012447`
原始查询	`LOC131012447`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like
产物	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2%2C mitochondrial-like
Arabidopsis	`AT5G40650` (SDH2-2) succinate dehydrogenase 2-2 [Source:NCBI gene (formerly Entrezgene);Acc:834065] identity=76.1; qcov=0.933; evalue=5.35e-158; confidence=high
Rice	`Os08g0120000` (OJ1005_B05.29-2) - identity=68.5; qcov=0.92; evalue=3.94e-135; confidence=high
GO	GO:0005739 (mitochondrion); GO:0006099 (tricarboxylic acid cycle); GO:0009055 (electron transfer activity); GO:0009060 (aerobic respiration); GO:0022904 (respiratory electron transport chain); GO:0051537 (2 iron, 2 sulfur cluster binding)
KEGG	smil00020 (Citrate cycle (TCA cycle) - Salvia miltiorrhiza (redroot sage)); smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF13085 (Fer2_3); PF13183 (Fer4_8); PF13237 (Fer4_10); PF13534 (Fer4_17)
InterPro	-
eggNOG	-
NR	GeneID:131012447

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057796385.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057796385.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057796385.1`
4	Nucleus	细胞核	0.00000	`XP_057796385.1`
5	Chromosome	染色体	0.00000	`XP_057796385.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:70483`	`ACT`	`A`	2bp_deletion	frameshift_variant	14	A3,B101,B32,B46,B53,B85,C21,C25,C26,C37,C40,C53,C69,D9
`Chr2:70572`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B95
`Chr2:70736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C21,D2
`Chr2:70854`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr2:70952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr2:71123`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr2:73181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B113,B28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796385.1

300 aa

150

300

Fer2_3

Fer4_8

Fer4_10

Fer4_17

PF13085 Fer2_3 72-174 aa PF13183 Fer4_8 210-284 aa PF13237 Fer4_10 212-281 aa PF13534 Fer4_17 212-285 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796385.1`	Pfam	`PF13085`	Fer2_3	Domain	72	174	1.8e-33	115.5	2Fe-2S iron-sulfur cluster binding domain
`XP_057796385.1`	Pfam	`PF13183`	Fer4_8	Domain	210	284	1.6e-08	35.7	4Fe-4S dicluster domain
`XP_057796385.1`	Pfam	`PF13237`	Fer4_10	Domain	212	281	1.7e-07	31.8	4Fe-4S dicluster domain
`XP_057796385.1`	Pfam	`PF13534`	Fer4_17	Domain	212	285	3.4e-09	37.8	4Fe-4S dicluster domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940402.1
CACCGCCATATCCCTCTATATAATCCTCTCATGAACCCAGACCCATTTCCGTCATTCCTTCTCCACTCTCTCTCTCTAGATTCTCTCTTCCGATCAATGGCGACTGGACTGGTCCGACGAGCGATAGCAAGGATTTCGGCGTTGTCACCGGCGGCCAGAGCTGTCAATTATAGGGAACACGCATCGGAGGCGGCGGCGCAGCAGCTGGATCAGCAGGCGAAGCCGACCTCCGCCCCCAAAATCTTCCAGATCTACCGATG...

CDS

1 records

下载 CDS FASTA

LOC131012447
ATGAACCCAGACCCATTTCCGTCATTCCTTCTCCACTCTCTCTCTCTAGATTCTCTCTTCCGATCAATGGCGACTGGACTGGTCCGACGAGCGATAGCAAGGATTTCGGCGTTGTCACCGGCGGCCAGAGCTGTCAATTATAGGGAACACGCATCGGAGGCGGCGGCGCAGCAGCTGGATCAGCAGGCGAAGCCGACCTCCGCCCCCAAAATCTTCCAGATCTACCGATGGAATCCGGATACGCCGCAGAAGCCGGAGCT...

Protein

1 records

下载 Protein FASTA

XP_057796385.1
MNPDPFPSFLLHSLSLDSLFRSMATGLVRRAIARISALSPAARAVNYREHASEAAAQQLDQQAKPTSAPKIFQIYRWNPDTPQKPELQSYEIDLKECGPMVLDALIKIKNEVDPSLTFRRSCREGICGSCAMNIDGRNGLACLTKIASGGPTMVTPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSPPENPGKENLQSKEDRKKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEYTKERLDA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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