Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000036

染色体: Chr02 坐标: 430101-435404 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000036
名称SmilChr02G000036
描述uncharacterized SmilChr02G000036
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向430101 - 435404 / -

ID 对照

NCBI Gene IDLOC131012460
GeneID131012460
locus_tag-
NCBI NameLOC131012460
原始查询LOC131012460

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Myosin heavy chain-related protein [Source:NCBI gene (formerly Entrezgene);Acc:842636]; symbol=AT1G63300; hit=AT1G63300; species=arabidopsis; confidence=high
产物Myosin heavy chain-related protein [Source:NCBI gene (formerly Entrezgene);Acc:842636]; symbol=AT1G63300; hit=AT1G63300; species=arabidopsis; confidence=high
ArabidopsisAT1G63300 (AT1G63300)
Myosin heavy chain-related protein [Source:NCBI gene (formerly Entrezgene);Acc:842636]
identity=45.3; qcov=1.06; evalue=0; confidence=high
RiceOs03g0107400
-
identity=25.3; qcov=0.964; evalue=4.7e-29; confidence=low
GO-
KEGG-
PfamPF10358 (NT-C2)
InterPro-
eggNOG-
NRGeneID:131012460

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.60000 XP_057796396.1
2 Cytosol 细胞质基质 0.40000 XP_057796396.1
3 Cytoplasm 细胞质 0.20000 XP_057796396.1
4 Nucleus 细胞核 0.00000 XP_057796396.1
5 Chromosome 染色体 0.00000 XP_057796396.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:430368 C T EMS_canonical_SNV CDS_variant 2 B21,C26
Chr2:430464 C T EMS_canonical_SNV CDS_variant 3 B106,B132,D4
Chr2:430554 C T EMS_canonical_SNV CDS_variant 2 C20,C80
Chr2:430567 C T EMS_canonical_SNV CDS_variant 2 B102,B14
Chr2:431315 C T EMS_canonical_SNV CDS_variant 5 B52,C27,C28,C7,C82
Chr2:431465 G A EMS_canonical_SNV CDS_variant 1 B125
Chr2:431508 G A EMS_canonical_SNV CDS_variant 2 C28,D7
Chr2:431529 C T EMS_canonical_SNV CDS_variant 2 C43,C65
Chr2:431649 C T EMS_canonical_SNV CDS_variant 5 B105,B27,B33,C18,C76
Chr2:431694 C T EMS_canonical_SNV CDS_variant 1 D11
Chr2:431793 C T EMS_canonical_SNV CDS_variant 4 A2,A3,B20,C73
Chr2:431865 C T EMS_canonical_SNV CDS_variant 4 A2,A3,B20,C73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057796396.1
994 aa
N
1
497
994
NT-C2
C
PF10358 NT-C2 11-140 aa
XP_057796397.1
993 aa
N
1
496
993
NT-C2
C
PF10358 NT-C2 11-140 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796396.1 Pfam PF10358 NT-C2 Domain 11 140 2.1e-21 76.8 N-terminal C2 in EEIG1 and EHBP1 proteins
XP_057796397.1 Pfam PF10358 NT-C2 Domain 11 140 2.1e-21 76.8 N-terminal C2 in EEIG1 and EHBP1 proteins

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057940414.1
AACCAAAAAAATAATGGTCCATACATACATAAACCCCAAAAACTCCCAAACAAATAAACTTCCTCTCTCTCTCTCTCTCTCTCTCAACAGCCAGCCCATACAGTACTTTTATGGAGTTATGGCGAAATGCTGAAAGAAAGAGCACACAATAACTCAATCTTTCTCAGCCTCCCTCGCTATTCCCTTCATCTCTATCTTCCCTATAAGCGCTAAACAGAGCTTTAACGCTCCTATTTTCTGATCCGCCATTAATGCATTGA...
XM_057940413.1
AAAAAAATAATGGTCCATACATACATAAACCCCAAAAACTCCCAAACAAATAAACTTCCTCTCTCTCTCTCTCTCTCTCTCAACAGCCAGCCCATACAGTACTTTTATGGAGTTATGGCGAAATGCTGAAAGAAAGAGCACACAATAACTCAATCTTTCTCAGCCTCCCTCGCTATTCCCTTCATCTCTATCTTCCCTATAAGCGCTAAACAGAGCTTTAACGCTCCTATTTTCTGATCCGCCATTAATGCATTGAGCCC...

CDS

2 records

下载 CDS FASTA
LOC131012460
ATGTTCAAGCCGGCGCGATGGTGGAGCGACAAGCACAGAATCAAAGCTGTTTTCAAGTTGCACTTTCATGCATCTCAGGTGACACAGGTTGGAGGGGATGGATTGATGGTCTCCGTTGTCCCCGGAGATACCGGCAAGCCCTCTGCAAGGTCGGAAAAGGCTGCAGTTCGAGATGGGGGTTGTGTGTGGGAGAATCCAGTTTATGAGACTGTCAAGTTCAATAGGGATCCAAAATCAGGGAAGATTCATCAAAAGATGTA...
LOC131012460
ATGTTCAAGCCGGCGCGATGGTGGAGCGACAAGCACAGAATCAAAGCTGTTTTCAAGTTGCACTTTCATGCATCTCAGGTGACACAGGTTGGAGGGGATGGATTGATGGTCTCCGTTGTCCCCGGAGATACCGGCAAGCCCTCTGCAAGGTCGGAAAAGGCTGCAGTTCGAGATGGGGGTTGTGTGTGGGAGAATCCAGTTTATGAGACTGTCAAGTTCAATAGGGATCCAAAATCAGGGAAGATTCATCAAAAGATGTA...

Protein

2 records

下载 Protein FASTA
XP_057796396.1
MFKPARWWSDKHRIKAVFKLHFHASQVTQVGGDGLMVSVVPGDTGKPSARSEKAAVRDGGCVWENPVYETVKFNRDPKSGKIHQKMYLLVLSTGSSRSGAVGEASIDFSIYAEASKPSLASLPLKNSKGEAILHVSIQRVHDQREIEENEDASLYSHGDDADGAFRSDSVEEDPPSSKAEFETTLRASSGSDITLSSSGSSSGLEAPWEMQTKNEPVRYLTTPGPKSDTPSPVHRSSWEWLRDSATPNDTSRSALGGTFL...
XP_057796397.1
MFKPARWWSDKHRIKAVFKLHFHASQVTQVGGDGLMVSVVPGDTGKPSARSEKAAVRDGGCVWENPVYETVKFNRDPKSGKIHQKMYLLVLSTGSSRSGAVGEASIDFSIYAEASKPSLASLPLKNSKGEAILHVSIQRVHDQREIEENEDASLYSHGDDADGAFRSDSVEEDPPSSKAEFETTLRASSGSDITLSSSGSSSGLEAPWEMQTKNEPVRYLTTPGPKSDTPSPVHRSSWEWLRDSATPNDTSRSALGGTFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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