当前解析结果
SmilChr02G000036| 统一新 Gene ID | SmilChr02G000036 |
|---|---|
| 名称 | SmilChr02G000036 |
| 描述 | uncharacterized SmilChr02G000036 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 430101 - 435404 / - |
| NCBI Gene ID | LOC131012460 |
|---|---|
| GeneID | 131012460 |
| locus_tag | - |
| NCBI Name | LOC131012460 |
| 原始查询 | LOC131012460 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Myosin heavy chain-related protein [Source:NCBI gene (formerly Entrezgene);Acc:842636]; symbol=AT1G63300; hit=AT1G63300; species=arabidopsis; confidence=high |
| 产物 | Myosin heavy chain-related protein [Source:NCBI gene (formerly Entrezgene);Acc:842636]; symbol=AT1G63300; hit=AT1G63300; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G63300 (AT1G63300)Myosin heavy chain-related protein [Source:NCBI gene (formerly Entrezgene);Acc:842636] identity=45.3; qcov=1.06; evalue=0; confidence=high |
| Rice | Os03g0107400- identity=25.3; qcov=0.964; evalue=4.7e-29; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF10358 (NT-C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012460 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057796396.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057796396.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057796396.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057796396.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057796396.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:430368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B21,C26 |
Chr2:430464 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B106,B132,D4 |
Chr2:430554 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C20,C80 |
Chr2:430567 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,B14 |
Chr2:431315 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B52,C27,C28,C7,C82 |
Chr2:431465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr2:431508 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C28,D7 |
Chr2:431529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C43,C65 |
Chr2:431649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B27,B33,C18,C76 |
Chr2:431694 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:431793 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,A3,B20,C73 |
Chr2:431865 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,A3,B20,C73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796396.1PF10358
NT-C2 11-140 aa
XP_057796397.1PF10358
NT-C2 11-140 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796396.1 |
Pfam | PF10358 |
NT-C2 | Domain | 11 | 140 | 2.1e-21 | 76.8 | N-terminal C2 in EEIG1 and EHBP1 proteins |
XP_057796397.1 |
Pfam | PF10358 |
NT-C2 | Domain | 11 | 140 | 2.1e-21 | 76.8 | N-terminal C2 in EEIG1 and EHBP1 proteins |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。