当前解析结果
SmilChr02G000055| 统一新 Gene ID | SmilChr02G000055 |
|---|---|
| 名称 | SmilChr02G000055 |
| 描述 | protein ACCELERATED CELL DEATH 6-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 718164 - 720898 / + |
| NCBI Gene ID | LOC131012469 |
|---|---|
| GeneID | 131012469 |
| locus_tag | - |
| NCBI Name | LOC131012469 |
| 原始查询 | LOC131012469 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ACCELERATED CELL DEATH 6-like |
| 产物 | protein ACCELERATED CELL DEATH 6-like |
| Arabidopsis | AT1G03670 (AT1G03670)ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:839438] identity=36; qcov=1; evalue=4.62e-112; confidence=medium |
| Rice | Os07g0193200- identity=30.3; qcov=0.956; evalue=8.1e-63; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012469 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796409.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796409.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796409.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796409.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796409.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:718492 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr2:718520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B3,B54 |
Chr2:718528 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:718564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B106,B18,C14 |
Chr2:718565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr2:718582 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,B64,C14 |
Chr2:718777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr2:719987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr2:720272 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B31,B52,B57,B91,C49 |
Chr2:720422 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C80 |
Chr2:720422 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C80 |
Chr2:720467 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B126,B64,C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796409.1PF12796
Ank_2 55-117 aa
PF12796
Ank_2 91-153 aa
PF00023
Ank 95-116 aa
PF12796
Ank_2 126-187 aa
PF00023
Ank 131-152 aa
PF12796
Ank_2 169-257 aa
PF00023
Ank 234-255 aa
PF12796
Ank_2 264-323 aa
PF13962
PGG 428-537 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796409.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 55 | 117 | 1.9e-49 | 166.9 | Ankyrin repeats (3 copies) |
XP_057796409.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 91 | 153 | 1.9e-49 | 166.9 | Ankyrin repeats (3 copies) |
XP_057796409.1 |
Pfam | PF00023 |
Ank | Repeat | 95 | 116 | 5e-36 | 121.4 | Ankyrin repeat |
XP_057796409.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 126 | 187 | 1.9e-49 | 166.9 | Ankyrin repeats (3 copies) |
XP_057796409.1 |
Pfam | PF00023 |
Ank | Repeat | 131 | 152 | 5e-36 | 121.4 | Ankyrin repeat |
XP_057796409.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 169 | 257 | 1.9e-49 | 166.9 | Ankyrin repeats (3 copies) |
XP_057796409.1 |
Pfam | PF00023 |
Ank | Repeat | 234 | 255 | 5e-36 | 121.4 | Ankyrin repeat |
XP_057796409.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 264 | 323 | 1.9e-49 | 166.9 | Ankyrin repeats (3 copies) |
XP_057796409.1 |
Pfam | PF13962 |
PGG | Domain | 428 | 537 | 1.6e-31 | 109.2 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。