Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000104`

染色体: Chr02 坐标: 1329777-1338074 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000104`
名称	SmilChr02G000104
描述	mitochondrial inner membrane protein OXA1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	1329777 - 1338074 / `-`

ID 对照

NCBI Gene ID	`LOC131012490`
GeneID	`131012490`
locus_tag	`-`
NCBI Name	`LOC131012490`
原始查询	`LOC131012490`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitochondrial inner membrane protein OXA1-like
产物	mitochondrial inner membrane protein OXA1-like
Arabidopsis	`AT5G62050` (OXA1) inner membrane OXA1-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836325] identity=29.2; qcov=1.03; evalue=2.16e-36; confidence=low
Rice	`Os10g0521300` - identity=29.7; qcov=0.661; evalue=3.41e-22; confidence=low
GO	GO:0005743 (mitochondrial inner membrane); GO:0032977 (membrane insertase activity); GO:0032979 (protein insertion into mitochondrial inner membrane from matrix); GO:0033617 (mitochondrial respiratory chain complex IV assembly)
KEGG	smil03060 (Protein export - Salvia miltiorrhiza (redroot sage))
Pfam	PF02096 (60KD_IMP)
InterPro	-
eggNOG	-
NR	GeneID:131012490

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057796454.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057796454.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057796454.1`
4	Nucleus	细胞核	0.00000	`XP_057796454.1`
5	Chromosome	染色体	0.00000	`XP_057796454.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:1330185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B78,B90,C24,C85
`Chr2:1330230`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B10,B128,B133,D4,D8
`Chr2:1330372`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B127,B2
`Chr2:1330566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B25,B52,C15,C46,C57
`Chr2:1330573`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:1330622`	`A`	`AG`	1bp_insertion	frameshift_variant	17	A15,B100,B113,B15,B77,B9,B90,B92,C12,C15,C38,C41,C50,C63,C64,C66,D3
`Chr2:1330626`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr2:1330639`	`C`	`CAA`	2bp_insertion	frameshift_variant	75	A11,A23,A3,A5,A6,A7,B10,B101,B106,B108,B117,B122,B124,B128,B130,B134,B17,B2,B20,B21,B23,B29,B3,B37,B4,B42,B43,B48,B54,B55,B6,B63,B67,B69,B70,B71,B73,B76,B79,B83,B84,B88,B91,B96,B97,C11,C16,C21,C27,C29,C31,C32,C35,C36,C38,C4,C42,C53,C54,C55,C60,C65,C68,C70,C71,C72,C74,C78,C8,C87,D11,D2,D4,D7,D8
`Chr2:1330641`	`AAT`	`A`	2bp_deletion	frameshift_variant	88	A11,A18,A22,A23,A3,A5,A6,A7,B10,B101,B105,B106,B108,B117,B121,B124,B128,B13,B130,B134,B140,B17,B2,B20,B21,B23,B26,B27,B29,B3,B35,B37,B4,B42,B43,B44,B48,B54,B55,B56,B6,B63,B67,B69,B70,B71,B73,B76,B79,B83,B84,B88,B89,B91,B96,B97,C11,C16,C21,C27,C29,C31,C32,C35,C36,C38,C4,C42,C48,C53,C54,C55,C60,C65,C68,C69,C70,C71,C72,C74,C78,C8,C87,D11,D2,D4,D7,D8
`Chr2:1330736`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,C59,C87
`Chr2:1330749`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C28
`Chr2:1330749`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796454.1

382 aa

191

382

60KD_IMP

PF02096 60KD_IMP 176-363 aa

XP_057796455.1

382 aa

191

382

60KD_IMP

PF02096 60KD_IMP 176-363 aa

XP_057796457.1

351 aa

176

351

60KD_IMP

PF02096 60KD_IMP 145-332 aa

XP_057796458.1

351 aa

176

351

60KD_IMP

PF02096 60KD_IMP 145-332 aa

XP_057796459.1

351 aa

176

351

60KD_IMP

PF02096 60KD_IMP 145-332 aa

XP_057796460.1

351 aa

176

351

60KD_IMP

PF02096 60KD_IMP 145-332 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796454.1`	Pfam	`PF02096`	60KD_IMP	Domain	176	363	4.5e-09	37.1	60Kd inner membrane protein
`XP_057796455.1`	Pfam	`PF02096`	60KD_IMP	Domain	176	363	4.5e-09	37.1	60Kd inner membrane protein
`XP_057796457.1`	Pfam	`PF02096`	60KD_IMP	Domain	145	332	4.2e-09	37.2	60Kd inner membrane protein
`XP_057796458.1`	Pfam	`PF02096`	60KD_IMP	Domain	145	332	4.2e-09	37.2	60Kd inner membrane protein
`XP_057796459.1`	Pfam	`PF02096`	60KD_IMP	Domain	145	332	4.2e-09	37.2	60Kd inner membrane protein
`XP_057796460.1`	Pfam	`PF02096`	60KD_IMP	Domain	145	332	4.2e-09	37.2	60Kd inner membrane protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057940472.1
CTTCCGGAGGAGTTGAGGCAGCGTGAAAGCTAGTAAGTTTAATTCCTAAAAAGGAAAGGAATAAAGAGGAAAAGAAAAAGGAAGAAAGTGAGTTGCTAACTTAGATCACTCATTATCAGCTTAAAAGCTAGCTTTTCCTCTACAGCTTAAAACCTGTGGAGATCCCCCTCATCGCTCAATTCCAAAACCCTAGTAAGATTTTAATTTTCAGTTTTATGTTAATAAAAGCATGTCGCCTTTTTTTGGGAGATCGTAAACCC...

XM_057940475.1
CTTCCGGAGGAGTTGAGGCAGCGTGAAAGCTAGTAAGTTTAATTCCTAAAAAGGAAAGGAATAAAGAGGAAAAGAAAAAGGAAGAAAGTGAGTTGCTAACTTAGATCACTCATTATCAGCTTAAAAGCTAGCTTTTCCTCTACAGCTTAAAACCTGTGGAGATCCCCCTCATCGCTCAATTCCAAAACCCTAATCGCGGAAGTAATGGCGTATAGGCGTAGCATCATAGCTAGAACTAAGTTGTTTTATCAACAGCACCA...

CDS

7 records

下载 CDS FASTA

LOC131012490
ATGTTAATAAAAGCATGTCGCCTTTTTTTGGGAGATCGTAAACCCCCCTTAAAGATACGCTTGAAAACATTCAATTTTGAGATCGCGGAAGTAATGGCGTATAGGCGTAGCATCATAGCTAGAACTAAGTTGTTTTATCAACAGCACCAGCGATTTGCCCCTTCTTTTTCACATATGAGTGGTAGCGATCGCGACGAATTGCCTGTTAAAAGCATTAACAGGAATACTGAGATCCGAAGCCATTTTCGGATTACCGGAAA...

Protein

7 records

下载 Protein FASTA

XP_057796454.1
MLIKACRLFLGDRKPPLKIRLKTFNFEIAEVMAYRRSIIARTKLFYQQHQRFAPSFSHMSGSDRDELPVKSINRNTEIRSHFRITGNIASNSLLPGSVSRLMRSEFRTGYGLNFQRNMSKLPSDIEGLHDAGDLHGAISAVGERAVEVAPVVNEAAVAAADSINYLNLIEVLHCCAGLEWWASIAATTLLMRFILVPSQIYFLQFCSKNFTAIQKHVNDFGTSGFSIENIEKDEAWIKVASSYDKLHWRGLMASLISGIC...

XP_057796455.1
MLIKACRLFLGDRKPPLKIRLKTFNFEIAEVMAYRRSIIARTKLFYQQHQRFAPSFSHMSGSDRDELPVKSINRNTEIRSHFRITGNIASNSLLPGSVSRLMRSEFRTGYGLNFQRNMSKLPSDIEGLHDAGDLHGAISAVGERAVEVAPVVNEAAVAAADSINYLNLIEVLHCCAGLEWWASIAATTLLMRFILVPSQIYFLQFCSKNFTAIQKHVNDFGTSGFSIENIEKDEAWIKVASSYDKLHWRGLMASLISGIC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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