Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000153

染色体: Chr02 坐标: 2013847-2016994 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000153
名称SmilChr02G000153
描述probable polyol transporter 4
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向2013847 - 2016994 / +

ID 对照

NCBI Gene IDLOC131012570
GeneID131012570
locus_tag-
NCBI NameLOC131012570
原始查询LOC131012570

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable polyol transporter 4
产物probable polyol transporter 4
ArabidopsisAT2G20780 (AT2G20780)
Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816607]
identity=69.2; qcov=1.01; evalue=0; confidence=high
RiceOs04g0529800
-
identity=63.7; qcov=0.968; evalue=0; confidence=high
GOGO:0005366 (myo-inositol:proton symporter activity); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG-
PfamPF00083 (Sugar_tr); PF07690 (MFS_1)
InterPro-
eggNOG-
NRGeneID:131012570

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole 液泡 1.00000 XP_057796536.1
2 Vacuole membrane 液泡膜 1.00000 XP_057796536.1
3 Nucleus 细胞核 0.00000 XP_057796536.1
4 Chromosome 染色体 0.00000 XP_057796536.1
5 Centromere 着丝粒 0.00000 XP_057796536.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:2014243 C T EMS_canonical_SNV CDS_variant 1 C56
Chr2:2015356 GC G 1bp_deletion frameshift_variant 1 C62
Chr2:2015356 GC G 1bp_deletion CDS_variant 1 C62
Chr2:2015368 C T EMS_canonical_SNV CDS_variant 1 C11
Chr2:2015453 G GC 1bp_insertion frameshift_variant 1 C15
Chr2:2015453 G GC 1bp_insertion CDS_variant 1 C15
Chr2:2015458 G A EMS_canonical_SNV CDS_variant 1 C15
Chr2:2015461 CG C 1bp_deletion frameshift_variant 1 C15
Chr2:2015461 CG C 1bp_deletion CDS_variant 1 C15
Chr2:2015514 G A EMS_canonical_SNV CDS_variant 2 B56,B96
Chr2:2015572 C T EMS_canonical_SNV CDS_variant 5 B77,B99,C11,C27,C69
Chr2:2015602 G A EMS_canonical_SNV CDS_variant 1 B20

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057796536.1
532 aa
N
1
266
532
Sugar_tr
MFS_1
C
PF00083 Sugar_tr 66-509 aa PF07690 MFS_1 71-458 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796536.1 Pfam PF00083 Sugar_tr Family 66 509 7.1e-108 362.1 Sugar (and other) transporter
XP_057796536.1 Pfam PF07690 MFS_1 Family 71 458 1.8e-32 113.3 Major Facilitator Superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940553.1
ATCAAACCTTGGACAAGTAAAAAGTCAAGAACGTGTGATGGCATTCTGCAAACCAAATAAAAAAATAAATTAAAAAAAGAATTAACAAAAATGGGATTTTCTTACATGAACCAAAAAGAAGTTCCCCACTTGTCAATTAAAAGTCTTCATCACTCCCAATTTCAGATCTGCAAAACAAGCCCTCTTCTCCCCCAACCCCCACACCTGTCCACTGTTTCAAGAATCTAAGCTGAGAGCTCTTGAAACCGTTGCAAAGTTCC...

CDS

1 records

下载 CDS FASTA
LOC131012570
ATGGGCCTGCCCAAAATCCAAGAAAATGGGAACGTGGAGATGGGCTTGCCGTTGGGAGCCAGCAACAAATACACAAGAATGGATGATGACTCTGAGCTGAGAAACGGCGACGTTTTTGGTGAAGATTATGATGCGGCGGAGCACCACCGTCAGATGCAGCGGAGCAAAACCACTCGGAAATATGTGTTTGCTTGCTCTGTTTTCGCCTCTCTCAACAGCGTGCTTCTTGGCTACGATGTGGGAGTGATGAGTGGAGCAAT...

Protein

1 records

下载 Protein FASTA
XP_057796536.1
MGLPKIQENGNVEMGLPLGASNKYTRMDDDSELRNGDVFGEDYDAAEHHRQMQRSKTTRKYVFACSVFASLNSVLLGYDVGVMSGAILFIQEDLKITEVQQEVLIGILSVMSLLGSLGGGRTSDAIGRKWTMGLAAIVFQLGAVVMTFAPTFRVLMIGRILSGIGIGFGVMIAPVYIAEISPTIARGSLTSFPEIFINLGILLGYVSNYVFSGLPAHTNWRVMLAVGILPSIFIAFALCIIPESPRWLVLQGRIEEARSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器