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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000204

染色体: Chr02 坐标: 2632721-2635088 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000204
名称SmilChr02G000204
描述pentatricopeptide repeat-containing protein At1g62720-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向2632721 - 2635088 / -

ID 对照

NCBI Gene IDLOC131012588
GeneID131012588
locus_tag-
NCBI NameLOC131012588
原始查询LOC131012588

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g62720-like
产物pentatricopeptide repeat-containing protein At1g62720-like
ArabidopsisAT1G12620 (AT1G12620)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818]
identity=32.8; qcov=0.888; evalue=1.74e-114; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=31; qcov=0.916; evalue=1.1e-99; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012588

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057796554.1
2 Chloroplast 叶绿体 0.20000 XP_057796554.1
3 Nucleus 细胞核 0.00000 XP_057796554.1
4 Chromosome 染色体 0.00000 XP_057796554.1
5 Centromere 着丝粒 0.00000 XP_057796554.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:2633015 C T EMS_canonical_SNV CDS_variant 3 B1,B86,C83
Chr2:2633064 C T EMS_canonical_SNV CDS_variant 5 B100,B111,B31,B95,C35
Chr2:2633071 C T EMS_canonical_SNV CDS_variant 5 B100,B111,B31,B95,C35
Chr2:2633095 G A EMS_canonical_SNV CDS_variant 1 C71
Chr2:2633099 G A EMS_canonical_SNV CDS_variant 2 A7,C35
Chr2:2633121 C T EMS_canonical_SNV CDS_variant 1 B102
Chr2:2633262 C T EMS_canonical_SNV CDS_variant 1 B72
Chr2:2633293 G A EMS_canonical_SNV CDS_variant 1 C71
Chr2:2633314 G A EMS_canonical_SNV CDS_variant 2 B121,C71
Chr2:2633335 C T EMS_canonical_SNV CDS_variant 1 B131
Chr2:2633336 G A EMS_canonical_SNV CDS_variant 1 C71
Chr2:2633354 A ATC 2bp_insertion stop_gained,frameshift_variant 104 A13,A14,A15,A19,A21,A24,A6,A7,A8,A9,B1,B10,B102,B104,B105,B106,B108,B109,B11,B113,B114,B120,B121,B123,B125,B130,B132,B138,B20,B22,B24,B26,B27,B28,B30,B31,B33,B35,B36,B37,B39,B46,B47,B50,B55,B58,B59,B62,B66,B67,B69,B70,B76,B77,B79,B82,B88,B92,B94,B96,B97,B98,C13,C16,C19,C20,C23,C25,C27,C29,C3,C31,C33,C34,C35,C39,C41,C42,C45,C46,C48,C5,C50,C52,C53,C61,C62,C66,C67,C69,C72,C73,C74,C75,C76,C78,C80,C81,C86,C9,D10,D2,D3,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796554.1
669 aa
N
1
334
669
PPR_1
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_long
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR
C
PF12854 PPR_1 142-172 aa PF01535 PPR 148-174 aa PF13041 PPR_2 181-230 aa PF01535 PPR 189-213 aa PF13812 PPR_3 207-265 aa PF12854 PPR_1 214-245 aa PF01535 PPR 220-249 aa PF13041 PPR_2 223-265 aa PF17177 PPR_long 234-339 aa PF12854 PPR_1 247-279 aa PF13041 PPR_2 251-299 aa PF01535 PPR 254-283 aa PF23276 TPR_24 255-342 aa PF13812 PPR_3 276-333 aa PF12854 PPR_1 283-315 aa PF01535 PPR 289-319 aa PF23276 TPR_24 309-418 aa PF12854 PPR_1 317-344 aa PF13041 PPR_2 321-370 aa PF01535 PPR 325-354 aa PF13812 PPR_3 345-403 aa PF12854 PPR_1 352-385 aa PF13041 PPR_2 357-402 aa PF01535 PPR 360-389 aa PF12854 PPR_1 387-420 aa PF13041 PPR_2 391-440 aa PF01535 PPR 394-424 aa PF17177 PPR_long 408-532 aa PF13812 PPR_3 415-470 aa PF12854 PPR_1 423-454 aa PF13041 PPR_2 427-474 aa PF01535 PPR 429-458 aa PF13041 PPR_2 462-510 aa PF01535 PPR 464-492 aa PF17177 PPR_long 475-608 aa PF13812 PPR_3 484-541 aa PF12854 PPR_1 493-525 aa PF01535 PPR 499-529 aa PF13041 PPR_2 504-545 aa PF12854 PPR_1 527-557 aa PF13041 PPR_2 531-576 aa PF01535 PPR 534-564 aa PF13812 PPR_3 555-610 aa PF13041 PPR_2 566-610 aa PF01535 PPR 570-599 aa PF01535 PPR 604-634 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796554.1 Pfam PF12854 PPR_1 Repeat 142 172 2e-138 450.4 PPR repeat
XP_057796554.1 Pfam PF01535 PPR Repeat 148 174 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF13041 PPR_2 Repeat 181 230 4.9e-162 526.7 PPR repeat family
XP_057796554.1 Pfam PF01535 PPR Repeat 189 213 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF13812 PPR_3 Repeat 207 265 1.6e-71 237.0 Pentatricopeptide repeat domain
XP_057796554.1 Pfam PF12854 PPR_1 Repeat 214 245 2e-138 450.4 PPR repeat
XP_057796554.1 Pfam PF01535 PPR Repeat 220 249 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF13041 PPR_2 Repeat 223 265 4.9e-162 526.7 PPR repeat family
XP_057796554.1 Pfam PF17177 PPR_long Repeat 234 339 1.3e-40 139.8 Pentacotripeptide-repeat region of PRORP
XP_057796554.1 Pfam PF12854 PPR_1 Repeat 247 279 2e-138 450.4 PPR repeat
XP_057796554.1 Pfam PF13041 PPR_2 Repeat 251 299 4.9e-162 526.7 PPR repeat family
XP_057796554.1 Pfam PF01535 PPR Repeat 254 283 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF23276 TPR_24 Repeat 255 342 1.6e-34 119.4 Pentatricopeptide repeat-containing protein
XP_057796554.1 Pfam PF13812 PPR_3 Repeat 276 333 1.6e-71 237.0 Pentatricopeptide repeat domain
XP_057796554.1 Pfam PF12854 PPR_1 Repeat 283 315 2e-138 450.4 PPR repeat
XP_057796554.1 Pfam PF01535 PPR Repeat 289 319 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF23276 TPR_24 Repeat 309 418 1.6e-34 119.4 Pentatricopeptide repeat-containing protein
XP_057796554.1 Pfam PF12854 PPR_1 Repeat 317 344 2e-138 450.4 PPR repeat
XP_057796554.1 Pfam PF13041 PPR_2 Repeat 321 370 4.9e-162 526.7 PPR repeat family
XP_057796554.1 Pfam PF01535 PPR Repeat 325 354 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF13812 PPR_3 Repeat 345 403 1.6e-71 237.0 Pentatricopeptide repeat domain
XP_057796554.1 Pfam PF12854 PPR_1 Repeat 352 385 2e-138 450.4 PPR repeat
XP_057796554.1 Pfam PF13041 PPR_2 Repeat 357 402 4.9e-162 526.7 PPR repeat family
XP_057796554.1 Pfam PF01535 PPR Repeat 360 389 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF12854 PPR_1 Repeat 387 420 2e-138 450.4 PPR repeat
XP_057796554.1 Pfam PF13041 PPR_2 Repeat 391 440 4.9e-162 526.7 PPR repeat family
XP_057796554.1 Pfam PF01535 PPR Repeat 394 424 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF17177 PPR_long Repeat 408 532 1.3e-40 139.8 Pentacotripeptide-repeat region of PRORP
XP_057796554.1 Pfam PF13812 PPR_3 Repeat 415 470 1.6e-71 237.0 Pentatricopeptide repeat domain
XP_057796554.1 Pfam PF12854 PPR_1 Repeat 423 454 2e-138 450.4 PPR repeat
XP_057796554.1 Pfam PF13041 PPR_2 Repeat 427 474 4.9e-162 526.7 PPR repeat family
XP_057796554.1 Pfam PF01535 PPR Repeat 429 458 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF13041 PPR_2 Repeat 462 510 4.9e-162 526.7 PPR repeat family
XP_057796554.1 Pfam PF01535 PPR Repeat 464 492 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF17177 PPR_long Repeat 475 608 1.3e-40 139.8 Pentacotripeptide-repeat region of PRORP
XP_057796554.1 Pfam PF13812 PPR_3 Repeat 484 541 1.6e-71 237.0 Pentatricopeptide repeat domain
XP_057796554.1 Pfam PF12854 PPR_1 Repeat 493 525 2e-138 450.4 PPR repeat
XP_057796554.1 Pfam PF01535 PPR Repeat 499 529 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF13041 PPR_2 Repeat 504 545 4.9e-162 526.7 PPR repeat family
XP_057796554.1 Pfam PF12854 PPR_1 Repeat 527 557 2e-138 450.4 PPR repeat
XP_057796554.1 Pfam PF13041 PPR_2 Repeat 531 576 4.9e-162 526.7 PPR repeat family
XP_057796554.1 Pfam PF01535 PPR Repeat 534 564 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF13812 PPR_3 Repeat 555 610 1.6e-71 237.0 Pentatricopeptide repeat domain
XP_057796554.1 Pfam PF13041 PPR_2 Repeat 566 610 4.9e-162 526.7 PPR repeat family
XP_057796554.1 Pfam PF01535 PPR Repeat 570 599 1.8e-103 332.5 PPR repeat
XP_057796554.1 Pfam PF01535 PPR Repeat 604 634 1.8e-103 332.5 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940571.1
CATTGAAGAGTAGTAGTACTTTTTTTCTTTTTGTTTGGTAGGCATTAAAGAGTACTTTTATCTTTTACATATTCTATAACTGAATCTCTTCTTTCGCACTTCAGATCTAATCTCGCTGTCGCCGCCCAACACTCTCTCTTTTCTTTCTTCACATTAAATCTCACCGCCGATTAAGGATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGCATCAATCG...

CDS

1 records

下载 CDS FASTA
LOC131012588
ATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGCATCAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGTTGTGTTAAAGAATTAGACGATGTTATTCAATTGTTTCAAAAAATAAAGAATATGCGGCAAGAGCCTTCTGTTCTCCTGTATAACAAACTCATGAGTGTTAG...

Protein

1 records

下载 Protein FASTA
XP_057796554.1
MMARRAVVSAIDLIHRRGFLNRWSQHQSGILSPLFSLFSSEAFQPKRSRIDFSCVKELDDVIQLFQKIKNMRQEPSVLLYNKLMSVSVTIEQYSFALDVFGEMLRMGVPVNDYTRNIAVNCCCLLKDINSGFCIMGFFFKIGYEPDTVTFSTLINGFFLVDKEAEAVKLFEKVLDLKLCEPNAVMILHVIDGLCKAGQVIEAHDWLHRLESSGWSPDVKSYSALIDGFCKGGMVDNAFKVLTKMVGKGILPNVVTYTSMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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