当前解析结果
SmilChr02G000210| 统一新 Gene ID | SmilChr02G000210 |
|---|---|
| 名称 | SmilChr02G000210 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 2746031 - 2749058 / + |
| NCBI Gene ID | LOC131012614 |
|---|---|
| GeneID | 131012614 |
| locus_tag | - |
| NCBI Name | LOC131012614 |
| 原始查询 | LOC131012614 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 |
| Arabidopsis | AT2G19130 (AT2G19130)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816430] identity=54.3; qcov=0.991; evalue=0; confidence=high |
| Rice | Os07g0553633- identity=49.3; qcov=0.999; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012614 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796581.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057796581.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796581.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796581.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796581.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:2746523 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr2:2746576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B49,C25 |
Chr2:2746621 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B128,B19,B31,C17,C30,C87,D1 |
Chr2:2746868 |
G |
GTA |
2bp_insertion | frameshift_variant | 5 | B66,B8,C14,D11,D9 |
Chr2:2746868 |
G |
GTA |
2bp_insertion | CDS_variant | 5 | B66,B8,C14,D11,D9 |
Chr2:2747584 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B37,B6,C43,C63 |
Chr2:2747747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:2748040 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B140,C37,C47,C48 |
Chr2:2748228 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,C13 |
Chr2:2748363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr2:2748652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:2748660 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C33,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057796581.1PF01453
B_lectin 76-186 aa
PF00954
S_locus_glycop 218-325 aa
PF08276
PAN_2 351-409 aa
PF07714
PK_Tyr_Ser-Thr 496-763 aa
PF00069
Pkinase 497-762 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796581.1 |
Pfam | PF01453 |
B_lectin | Repeat | 76 | 186 | 7.1e-31 | 107.5 | D-mannose binding lectin |
XP_057796581.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 218 | 325 | 1e-24 | 87.9 | S-locus glycoprotein domain |
XP_057796581.1 |
Pfam | PF08276 |
PAN_2 | Domain | 351 | 409 | 2.2e-11 | 44.4 | PAN-like domain |
XP_057796581.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 496 | 763 | 7.4e-42 | 144.1 | Protein tyrosine and serine/threonine kinase |
XP_057796581.1 |
Pfam | PF00069 |
Pkinase | Domain | 497 | 762 | 1.2e-47 | 163.3 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。