当前解析结果
SmilChr02G000211| 统一新 Gene ID | SmilChr02G000211 |
|---|---|
| 名称 | SmilChr02G000211 |
| 描述 | uncharacterized SmilChr02G000211 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 2749072 - 2751556 / - |
| NCBI Gene ID | LOC131012615 |
|---|---|
| GeneID | 131012615 |
| locus_tag | - |
| NCBI Name | LOC131012615 |
| 原始查询 | LOC131012615 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA repair metallo-beta-lactamase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839631]; symbol=AT1G27410; hit=AT1G27410; species=arabidopsis; confidence=high |
| 产物 | DNA repair metallo-beta-lactamase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839631]; symbol=AT1G27410; hit=AT1G27410; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G27410 (AT1G27410)DNA repair metallo-beta-lactamase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839631] identity=56.4; qcov=0.895; evalue=1.04e-147; confidence=high |
| Rice | Os01g0783400- identity=58.2; qcov=0.397; evalue=3.25e-61; confidence=low |
| GO | GO:0003684 (damaged DNA binding); GO:0006303 (double-strand break repair via nonhomologous end joining); GO:0031848 (protection from non-homologous end joining at telomere); GO:0035312 (5'-3' DNA exonuclease activity); GO:0036297 (interstrand cross-link repair) |
| KEGG | - |
| Pfam | PF07522 (DRMBL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012615 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057796582.1 |
| 2 | Nucleoplasm | 核质 | 0.20000 | XP_057796582.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057796582.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057796582.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057796582.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:2749283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:2749698 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | A11,B1,B78 |
Chr2:2749698 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B1,B78 |
Chr2:2749709 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr2:2749736 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr2:2749833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B37,B6,C43,C63 |
Chr2:2749865 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B110,B17,B28 |
Chr2:2749865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B110,B17,B28 |
Chr2:2750774 |
AG |
A |
1bp_deletion | frameshift_variant | 41 | A1,A2,B107,B110,B113,B114,B12,B120,B137,B19,B2,B22,B24,B25,B29,B30,B32,B33,B38,B39,B4,B60,B62,B63,B69,B72,B79,B91,B95,C16,C17,C19,C27,C30,C31,C35,C42,C49,C60,C86,D3 |
Chr2:2750843 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C6,D11 |
Chr2:2750845 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B114,B33,B67,C49,C86 |
Chr2:2750881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796582.1PF07522
DRMBL 220-332 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796582.1 |
Pfam | PF07522 |
DRMBL | Domain | 220 | 332 | 1.2e-10 | 42.3 | DNA repair metallo-beta-lactamase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。