Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000223`

染色体: Chr02 坐标: 2889346-2892011 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000223`
名称	SmilChr02G000223
描述	pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	2889346 - 2892011 / `-`

ID 对照

NCBI Gene ID	`LOC131012629`
GeneID	`131012629`
locus_tag	`-`
NCBI Name	`LOC131012629`
原始查询	`LOC131012629`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At1g62680%2C mitochondrial-like
Arabidopsis	`AT1G12620` (AT1G12620) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818] identity=31.6; qcov=0.96; evalue=5.93e-109; confidence=low
Rice	`Os10g0495200` (Rf4) - identity=31.6; qcov=0.874; evalue=1.19e-94; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131012629

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057796597.1`
2	Chloroplast	叶绿体	0.20000	`XP_057796597.1`
3	Nucleus	细胞核	0.00000	`XP_057796597.1`
4	Chromosome	染色体	0.00000	`XP_057796597.1`
5	Centromere	着丝粒	0.00000	`XP_057796597.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:2889993`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	B114,B70,B74,C24,D2
`Chr2:2889993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B114,B70,B74,C24,D2
`Chr2:2890039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B82,C28,D7
`Chr2:2890066`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B114,B22,B70,C24,D2
`Chr2:2890071`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr2:2890084`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B6,B84
`Chr2:2890111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr2:2890114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B42
`Chr2:2890117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr2:2890128`	`GCA`	`G`	2bp_deletion	frameshift_variant	1	B42
`Chr2:2890128`	`GCA`	`G`	2bp_deletion	CDS_variant	1	B42
`Chr2:2890129`	`CAT`	`*`	2bp_deletion	CDS_variant	1	B42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796597.1

669 aa

334

669

PPR

PPR_1

PPR

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_2

TPR_24

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

PF01535 PPR 80-108 aa PF12854 PPR_1 141-172 aa PF01535 PPR 148-175 aa PF13041 PPR_2 188-230 aa PF01535 PPR 189-213 aa PF13812 PPR_3 207-265 aa PF12854 PPR_1 215-245 aa PF13041 PPR_2 216-253 aa PF01535 PPR 220-249 aa PF12854 PPR_1 247-279 aa PF13041 PPR_2 251-299 aa PF01535 PPR 254-283 aa PF13812 PPR_3 276-333 aa PF12854 PPR_1 283-315 aa PF01535 PPR 289-319 aa PF13041 PPR_2 293-335 aa PF23276 TPR_24 307-419 aa PF12854 PPR_1 317-344 aa PF13041 PPR_2 321-370 aa PF01535 PPR 325-354 aa PF13812 PPR_3 345-402 aa PF12854 PPR_1 352-385 aa PF01535 PPR 360-389 aa PF13041 PPR_2 360-404 aa PF13812 PPR_3 380-425 aa PF12854 PPR_1 387-419 aa PF13041 PPR_2 391-440 aa PF01535 PPR 394-423 aa PF13812 PPR_3 415-470 aa PF12854 PPR_1 423-453 aa PF13041 PPR_2 427-473 aa PF01535 PPR 429-458 aa PF13041 PPR_2 462-510 aa PF01535 PPR 464-492 aa PF13812 PPR_3 484-541 aa PF12854 PPR_1 493-525 aa PF01535 PPR 499-529 aa PF12854 PPR_1 527-557 aa PF13041 PPR_2 531-579 aa PF01535 PPR 534-564 aa PF13812 PPR_3 555-610 aa PF13041 PPR_2 566-609 aa PF01535 PPR 570-599 aa PF01535 PPR 604-634 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	80	108	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF12854`	PPR_1	Repeat	141	172	2e-123	402.5	PPR repeat
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	148	175	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF13041`	PPR_2	Repeat	188	230	1.8e-155	505.7	PPR repeat family
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	189	213	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF13812`	PPR_3	Repeat	207	265	9.3e-67	221.7	Pentatricopeptide repeat domain
`XP_057796597.1`	Pfam	`PF12854`	PPR_1	Repeat	215	245	2e-123	402.5	PPR repeat
`XP_057796597.1`	Pfam	`PF13041`	PPR_2	Repeat	216	253	1.8e-155	505.7	PPR repeat family
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	220	249	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF12854`	PPR_1	Repeat	247	279	2e-123	402.5	PPR repeat
`XP_057796597.1`	Pfam	`PF13041`	PPR_2	Repeat	251	299	1.8e-155	505.7	PPR repeat family
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	254	283	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF13812`	PPR_3	Repeat	276	333	9.3e-67	221.7	Pentatricopeptide repeat domain
`XP_057796597.1`	Pfam	`PF12854`	PPR_1	Repeat	283	315	2e-123	402.5	PPR repeat
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	289	319	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF13041`	PPR_2	Repeat	293	335	1.8e-155	505.7	PPR repeat family
`XP_057796597.1`	Pfam	`PF23276`	TPR_24	Repeat	307	419	1.6e-33	116.1	Pentatricopeptide repeat-containing protein
`XP_057796597.1`	Pfam	`PF12854`	PPR_1	Repeat	317	344	2e-123	402.5	PPR repeat
`XP_057796597.1`	Pfam	`PF13041`	PPR_2	Repeat	321	370	1.8e-155	505.7	PPR repeat family
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	325	354	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF13812`	PPR_3	Repeat	345	402	9.3e-67	221.7	Pentatricopeptide repeat domain
`XP_057796597.1`	Pfam	`PF12854`	PPR_1	Repeat	352	385	2e-123	402.5	PPR repeat
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	360	389	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF13041`	PPR_2	Repeat	360	404	1.8e-155	505.7	PPR repeat family
`XP_057796597.1`	Pfam	`PF13812`	PPR_3	Repeat	380	425	9.3e-67	221.7	Pentatricopeptide repeat domain
`XP_057796597.1`	Pfam	`PF12854`	PPR_1	Repeat	387	419	2e-123	402.5	PPR repeat
`XP_057796597.1`	Pfam	`PF13041`	PPR_2	Repeat	391	440	1.8e-155	505.7	PPR repeat family
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	394	423	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF13812`	PPR_3	Repeat	415	470	9.3e-67	221.7	Pentatricopeptide repeat domain
`XP_057796597.1`	Pfam	`PF12854`	PPR_1	Repeat	423	453	2e-123	402.5	PPR repeat
`XP_057796597.1`	Pfam	`PF13041`	PPR_2	Repeat	427	473	1.8e-155	505.7	PPR repeat family
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	429	458	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF13041`	PPR_2	Repeat	462	510	1.8e-155	505.7	PPR repeat family
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	464	492	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF13812`	PPR_3	Repeat	484	541	9.3e-67	221.7	Pentatricopeptide repeat domain
`XP_057796597.1`	Pfam	`PF12854`	PPR_1	Repeat	493	525	2e-123	402.5	PPR repeat
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	499	529	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF12854`	PPR_1	Repeat	527	557	2e-123	402.5	PPR repeat
`XP_057796597.1`	Pfam	`PF13041`	PPR_2	Repeat	531	579	1.8e-155	505.7	PPR repeat family
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	534	564	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF13812`	PPR_3	Repeat	555	610	9.3e-67	221.7	Pentatricopeptide repeat domain
`XP_057796597.1`	Pfam	`PF13041`	PPR_2	Repeat	566	609	1.8e-155	505.7	PPR repeat family
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	570	599	3e-95	306.8	PPR repeat
`XP_057796597.1`	Pfam	`PF01535`	PPR	Repeat	604	634	3e-95	306.8	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940614.1
GTGAAACTCTTCTTTCTCACTTTTGTACCTTACTTCAGATCTAATCTCTCTTTCTTCACATTAAATCTCAACGCCGATTAAGGATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCCATGGTCGCAGCATCAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTCTCAACCTAAGCGGTCTAGAATCGATTTCAGTTGTGTTAAAGAAGTAGAC...

CDS

1 records

下载 CDS FASTA

LOC131012629
ATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCCATGGTCGCAGCATCAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTCTCAACCTAAGCGGTCTAGAATCGATTTCAGTTGTGTTAAAGAAGTAGACGATGTTATTCAATTGTTTCAAAAAATAAAGAGTTTGCGGCCAGAGCCTTCTGTTCGCCTCTACAACAAACTCATGAGTGTTAG...

Protein

1 records

下载 Protein FASTA

XP_057796597.1
MMARRAVVSAIDLIHRRGFLNPWSQHQSGILSPLFSLFSSEASQPKRSRIDFSCVKEVDDVIQLFQKIKSLRPEPSVRLYNKLMSVSVKIEQYYFAIDVFDEMLGMGVPVDNYTRNIAVNCCCLLKDIYSAFSIMGFFLKRGHEPDVVTFGTLIKGLFLVNKEAEAVKLFEKILDLKLCEPSNVMILHVIDGLCKTEHVIEAHDWLHRLESSGWRPNIYAYTALIDGFCNGGMVDNAFKLLTKMVGKGILPDIVAYNTMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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