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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000243

染色体: Chr02 坐标: 3135126-3138047 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000243
名称SmilChr02G000243
描述pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向3135126 - 3138047 / +

ID 对照

NCBI Gene IDLOC131012646
GeneID131012646
locus_tag-
NCBI NameLOC131012646
原始查询LOC131012646

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g62680%2C mitochondrial-like
ArabidopsisAT1G12620 (AT1G12620)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818]
identity=33; qcov=0.879; evalue=4.72e-113; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=32.7; qcov=0.899; evalue=7.76e-105; confidence=low
GOGO:0005515 (protein binding); GO:0009507 (chloroplast)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012646

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057796612.1
2 Chloroplast 叶绿体 0.20000 XP_057796612.1
3 Nucleus 细胞核 0.00000 XP_057796612.1
4 Chromosome 染色体 0.00000 XP_057796612.1
5 Centromere 着丝粒 0.00000 XP_057796612.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:3135249 G A EMS_canonical_SNV CDS_variant 4 B49,B60,C20,C45
Chr2:3135257 C T EMS_canonical_SNV CDS_variant 3 A1,B52,C2
Chr2:3135258 G A EMS_canonical_SNV CDS_variant 5 A25,B102,B67,C16,C29
Chr2:3135285 C T EMS_canonical_SNV CDS_variant 4 B100,B137,B58,C29
Chr2:3135325 G A EMS_canonical_SNV CDS_variant 1 B131
Chr2:3135366 G A EMS_canonical_SNV CDS_variant 3 B100,B137,C29
Chr2:3135383 G A EMS_canonical_SNV CDS_variant 2 B30,C6
Chr2:3135389 G A EMS_canonical_SNV CDS_variant 5 A9,B110,B59,B69,C34
Chr2:3135499 C T EMS_canonical_SNV CDS_variant 4 B102,C1,C29,D8
Chr2:3135513 C T EMS_canonical_SNV CDS_variant 4 B102,C1,C29,D8
Chr2:3135531 C T EMS_canonical_SNV CDS_variant 1 B102
Chr2:3135595 G A EMS_canonical_SNV CDS_variant 2 C71,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796612.1
676 aa
N
1
338
676
PPR_2
PPR_1
PPR
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_long
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR_2
PPR
C
PF13041 PPR_2 75-123 aa PF12854 PPR_1 142-172 aa PF01535 PPR 148-175 aa PF13041 PPR_2 188-230 aa PF01535 PPR 189-213 aa PF17177 PPR_long 201-295 aa PF13812 PPR_3 207-265 aa PF12854 PPR_1 214-245 aa PF13041 PPR_2 216-265 aa PF01535 PPR 220-249 aa PF13812 PPR_3 239-296 aa PF12854 PPR_1 247-279 aa PF13041 PPR_2 251-299 aa PF01535 PPR 254-283 aa PF23276 TPR_24 255-317 aa PF13812 PPR_3 276-333 aa PF17177 PPR_long 276-383 aa PF12854 PPR_1 283-315 aa PF01535 PPR 289-319 aa PF13041 PPR_2 294-335 aa PF23276 TPR_24 307-418 aa PF13812 PPR_3 310-366 aa PF12854 PPR_1 317-345 aa PF13041 PPR_2 321-370 aa PF01535 PPR 325-354 aa PF13812 PPR_3 345-403 aa PF12854 PPR_1 352-385 aa PF13041 PPR_2 357-404 aa PF01535 PPR 360-389 aa PF13812 PPR_3 380-422 aa PF12854 PPR_1 387-420 aa PF13041 PPR_2 391-440 aa PF01535 PPR 394-424 aa PF17177 PPR_long 404-548 aa PF13812 PPR_3 415-470 aa PF12854 PPR_1 423-454 aa PF13041 PPR_2 427-473 aa PF01535 PPR 429-455 aa PF17177 PPR_long 440-584 aa PF13041 PPR_2 462-510 aa PF01535 PPR 464-492 aa PF13812 PPR_3 484-542 aa PF12854 PPR_1 493-525 aa PF01535 PPR 499-529 aa PF13041 PPR_2 502-545 aa PF12854 PPR_1 527-557 aa PF13041 PPR_2 531-579 aa PF01535 PPR 534-564 aa PF13812 PPR_3 555-610 aa PF01535 PPR 570-599 aa PF13041 PPR_2 571-610 aa PF01535 PPR 604-634 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 75 123 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF12854 PPR_1 Repeat 142 172 1.2e-137 447.9 PPR repeat
XP_057796612.1 Pfam PF01535 PPR Repeat 148 175 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 188 230 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF01535 PPR Repeat 189 213 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF17177 PPR_long Repeat 201 295 1.3e-43 149.6 Pentacotripeptide-repeat region of PRORP
XP_057796612.1 Pfam PF13812 PPR_3 Repeat 207 265 3.2e-81 268.1 Pentatricopeptide repeat domain
XP_057796612.1 Pfam PF12854 PPR_1 Repeat 214 245 1.2e-137 447.9 PPR repeat
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 216 265 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF01535 PPR Repeat 220 249 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF13812 PPR_3 Repeat 239 296 3.2e-81 268.1 Pentatricopeptide repeat domain
XP_057796612.1 Pfam PF12854 PPR_1 Repeat 247 279 1.2e-137 447.9 PPR repeat
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 251 299 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF01535 PPR Repeat 254 283 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF23276 TPR_24 Repeat 255 317 1.3e-38 132.7 Pentatricopeptide repeat-containing protein
XP_057796612.1 Pfam PF13812 PPR_3 Repeat 276 333 3.2e-81 268.1 Pentatricopeptide repeat domain
XP_057796612.1 Pfam PF17177 PPR_long Repeat 276 383 1.3e-43 149.6 Pentacotripeptide-repeat region of PRORP
XP_057796612.1 Pfam PF12854 PPR_1 Repeat 283 315 1.2e-137 447.9 PPR repeat
XP_057796612.1 Pfam PF01535 PPR Repeat 289 319 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 294 335 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF23276 TPR_24 Repeat 307 418 1.3e-38 132.7 Pentatricopeptide repeat-containing protein
XP_057796612.1 Pfam PF13812 PPR_3 Repeat 310 366 3.2e-81 268.1 Pentatricopeptide repeat domain
XP_057796612.1 Pfam PF12854 PPR_1 Repeat 317 345 1.2e-137 447.9 PPR repeat
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 321 370 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF01535 PPR Repeat 325 354 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF13812 PPR_3 Repeat 345 403 3.2e-81 268.1 Pentatricopeptide repeat domain
XP_057796612.1 Pfam PF12854 PPR_1 Repeat 352 385 1.2e-137 447.9 PPR repeat
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 357 404 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF01535 PPR Repeat 360 389 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF13812 PPR_3 Repeat 380 422 3.2e-81 268.1 Pentatricopeptide repeat domain
XP_057796612.1 Pfam PF12854 PPR_1 Repeat 387 420 1.2e-137 447.9 PPR repeat
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 391 440 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF01535 PPR Repeat 394 424 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF17177 PPR_long Repeat 404 548 1.3e-43 149.6 Pentacotripeptide-repeat region of PRORP
XP_057796612.1 Pfam PF13812 PPR_3 Repeat 415 470 3.2e-81 268.1 Pentatricopeptide repeat domain
XP_057796612.1 Pfam PF12854 PPR_1 Repeat 423 454 1.2e-137 447.9 PPR repeat
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 427 473 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF01535 PPR Repeat 429 455 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF17177 PPR_long Repeat 440 584 1.3e-43 149.6 Pentacotripeptide-repeat region of PRORP
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 462 510 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF01535 PPR Repeat 464 492 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF13812 PPR_3 Repeat 484 542 3.2e-81 268.1 Pentatricopeptide repeat domain
XP_057796612.1 Pfam PF12854 PPR_1 Repeat 493 525 1.2e-137 447.9 PPR repeat
XP_057796612.1 Pfam PF01535 PPR Repeat 499 529 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 502 545 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF12854 PPR_1 Repeat 527 557 1.2e-137 447.9 PPR repeat
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 531 579 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF01535 PPR Repeat 534 564 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF13812 PPR_3 Repeat 555 610 3.2e-81 268.1 Pentatricopeptide repeat domain
XP_057796612.1 Pfam PF01535 PPR Repeat 570 599 1.8e-106 341.9 PPR repeat
XP_057796612.1 Pfam PF13041 PPR_2 Repeat 571 610 2.1e-176 572.7 PPR repeat family
XP_057796612.1 Pfam PF01535 PPR Repeat 604 634 1.8e-106 341.9 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940629.1
TCAGATCTAATCTCTTTTTATTCACATTAAATCTCACCGCCGATTAAGGATGATGGCAAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGCATCAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGTTGTGTTAAAGAAGTAGACGATGTTATTGAATTGTTTCAAAAAATAAAGAGTT...

CDS

1 records

下载 CDS FASTA
LOC131012646
ATGATGGCAAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGCATCAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGTTGTGTTAAAGAAGTAGACGATGTTATTGAATTGTTTCAAAAAATAAAGAGTTTGCGGCAAGAGCCTTCTGTTCTCCTGTATAACAAACTCATGAGTGTTAG...

Protein

1 records

下载 Protein FASTA
XP_057796612.1
MMARRAVVSAIDLIHRRGFLNRWSQHQSGILSPLFSLFSSEAFQPKRSRIDFSCVKEVDDVIELFQKIKSLRQEPSVLLYNKLMSVSVTIEQYYIALDVFDEMLRMGVPVNNYTRNIAVNCCCLLKDIYSAFSIMGFFLKGGYGPDTVTYGTLIKGLFLVNKEAEAVKLFEKILDLKLCEPSNVMILHVIDGLCKTGQVIEAHDWLHRLESSGWSPNVDTYNALIDGFCKGGMVDNAFKVLTKMVGKGVLPDVVTYSSMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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