Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000244`

染色体: Chr02 坐标: 3148828-3151320 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000244`
名称	SmilChr02G000244
描述	pentatricopeptide repeat-containing protein At5g16640, mitochondrial-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	3148828 - 3151320 / `+`

ID 对照

NCBI Gene ID	`LOC131012647`
GeneID	`131012647`
locus_tag	`-`
NCBI Name	`LOC131012647`
原始查询	`LOC131012647`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At5g16640, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At5g16640%2C mitochondrial-like
Arabidopsis	`AT1G12620` (AT1G12620) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818] identity=31.2; qcov=0.889; evalue=3.93e-103; confidence=low
Rice	`Os10g0495200` (Rf4) - identity=30.9; qcov=0.896; evalue=7.29e-95; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131012647

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057796613.1`
2	Chloroplast	叶绿体	0.20000	`XP_057796613.1`
3	Nucleus	细胞核	0.00000	`XP_057796613.1`
4	Chromosome	染色体	0.00000	`XP_057796613.1`
5	Centromere	着丝粒	0.00000	`XP_057796613.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:3148931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B5,B54,B99,C63
`Chr2:3149002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr2:3149234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B94,D11
`Chr2:3149372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B23,B53,C28,C40
`Chr2:3149374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,C41
`Chr2:3149380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,C75
`Chr2:3149382`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,C40,C9
`Chr2:3149386`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B23,C40,C9
`Chr2:3149428`	`G`	`GGT`	2bp_insertion	frameshift_variant	4	B5,C35,C53,D8
`Chr2:3149428`	`G`	`GGT`	2bp_insertion	CDS_variant	4	B5,C35,C53,D8
`Chr2:3149431`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B77,C59
`Chr2:3149471`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796613.1

675 aa

338

675

PPR

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_2

TPR_24

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_2

PPR

PPR_long

PPR_3

PPR_1

PPR

PPR_2

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

PF01535 PPR 79-107 aa PF12854 PPR_1 140-171 aa PF01535 PPR 147-174 aa PF01535 PPR 190-212 aa PF13041 PPR_2 190-229 aa PF13812 PPR_3 206-264 aa PF12854 PPR_1 213-244 aa PF13041 PPR_2 215-252 aa PF01535 PPR 219-248 aa PF12854 PPR_1 246-278 aa PF13041 PPR_2 250-298 aa PF01535 PPR 253-282 aa PF13812 PPR_3 275-332 aa PF12854 PPR_1 282-314 aa PF01535 PPR 288-318 aa PF13041 PPR_2 292-334 aa PF23276 TPR_24 306-418 aa PF12854 PPR_1 316-343 aa PF13041 PPR_2 320-369 aa PF01535 PPR 323-353 aa PF13812 PPR_3 344-400 aa PF12854 PPR_1 351-384 aa PF13041 PPR_2 356-403 aa PF01535 PPR 359-388 aa PF12854 PPR_1 387-418 aa PF13041 PPR_2 390-438 aa PF01535 PPR 393-422 aa PF13812 PPR_3 414-467 aa PF12854 PPR_1 422-453 aa PF13041 PPR_2 426-473 aa PF01535 PPR 428-457 aa PF13041 PPR_2 461-509 aa PF01535 PPR 463-491 aa PF17177 PPR_long 476-582 aa PF13812 PPR_3 483-540 aa PF12854 PPR_1 492-524 aa PF01535 PPR 498-528 aa PF13041 PPR_2 503-544 aa PF12854 PPR_1 526-556 aa PF13041 PPR_2 530-578 aa PF01535 PPR 533-563 aa PF13812 PPR_3 554-607 aa PF13041 PPR_2 565-608 aa PF01535 PPR 569-598 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	79	107	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF12854`	PPR_1	Repeat	140	171	4.4e-125	407.8	PPR repeat
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	147	174	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	190	212	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13041`	PPR_2	Repeat	190	229	5.9e-160	520.1	PPR repeat family
`XP_057796613.1`	Pfam	`PF13812`	PPR_3	Repeat	206	264	3.4e-69	229.6	Pentatricopeptide repeat domain
`XP_057796613.1`	Pfam	`PF12854`	PPR_1	Repeat	213	244	4.4e-125	407.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13041`	PPR_2	Repeat	215	252	5.9e-160	520.1	PPR repeat family
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	219	248	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF12854`	PPR_1	Repeat	246	278	4.4e-125	407.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13041`	PPR_2	Repeat	250	298	5.9e-160	520.1	PPR repeat family
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	253	282	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13812`	PPR_3	Repeat	275	332	3.4e-69	229.6	Pentatricopeptide repeat domain
`XP_057796613.1`	Pfam	`PF12854`	PPR_1	Repeat	282	314	4.4e-125	407.8	PPR repeat
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	288	318	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13041`	PPR_2	Repeat	292	334	5.9e-160	520.1	PPR repeat family
`XP_057796613.1`	Pfam	`PF23276`	TPR_24	Repeat	306	418	1.9e-31	109.4	Pentatricopeptide repeat-containing protein
`XP_057796613.1`	Pfam	`PF12854`	PPR_1	Repeat	316	343	4.4e-125	407.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13041`	PPR_2	Repeat	320	369	5.9e-160	520.1	PPR repeat family
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	323	353	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13812`	PPR_3	Repeat	344	400	3.4e-69	229.6	Pentatricopeptide repeat domain
`XP_057796613.1`	Pfam	`PF12854`	PPR_1	Repeat	351	384	4.4e-125	407.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13041`	PPR_2	Repeat	356	403	5.9e-160	520.1	PPR repeat family
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	359	388	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF12854`	PPR_1	Repeat	387	418	4.4e-125	407.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13041`	PPR_2	Repeat	390	438	5.9e-160	520.1	PPR repeat family
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	393	422	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13812`	PPR_3	Repeat	414	467	3.4e-69	229.6	Pentatricopeptide repeat domain
`XP_057796613.1`	Pfam	`PF12854`	PPR_1	Repeat	422	453	4.4e-125	407.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13041`	PPR_2	Repeat	426	473	5.9e-160	520.1	PPR repeat family
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	428	457	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13041`	PPR_2	Repeat	461	509	5.9e-160	520.1	PPR repeat family
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	463	491	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF17177`	PPR_long	Repeat	476	582	4.5e-32	111.9	Pentacotripeptide-repeat region of PRORP
`XP_057796613.1`	Pfam	`PF13812`	PPR_3	Repeat	483	540	3.4e-69	229.6	Pentatricopeptide repeat domain
`XP_057796613.1`	Pfam	`PF12854`	PPR_1	Repeat	492	524	4.4e-125	407.8	PPR repeat
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	498	528	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13041`	PPR_2	Repeat	503	544	5.9e-160	520.1	PPR repeat family
`XP_057796613.1`	Pfam	`PF12854`	PPR_1	Repeat	526	556	4.4e-125	407.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13041`	PPR_2	Repeat	530	578	5.9e-160	520.1	PPR repeat family
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	533	563	4.2e-99	318.8	PPR repeat
`XP_057796613.1`	Pfam	`PF13812`	PPR_3	Repeat	554	607	3.4e-69	229.6	Pentatricopeptide repeat domain
`XP_057796613.1`	Pfam	`PF13041`	PPR_2	Repeat	565	608	5.9e-160	520.1	PPR repeat family
`XP_057796613.1`	Pfam	`PF01535`	PPR	Repeat	569	598	4.2e-99	318.8	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057940630.1
ACCTTACTTCAGATCTAATCTCCCTTTCTTCACATTAAATCTCACCGCCGATTAAGGATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGAAATCGGGTATTCTCTATCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGTTGTGTTAAAGAAGTAGACGATGTTATTCAATTGTTTCAAAAAATAAA...

CDS

1 records

下载 CDS FASTA

LOC131012647
ATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGAAATCGGGTATTCTCTATCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCGGTCTAGAATCGATTTCAGTTGTGTTAAAGAAGTAGACGATGTTATTCAATTGTTTCAAAAAATAAAGAGTTTGCGGCCAGAGCCTTCTGTTCGCCTGTATAACAAACTCATGAGTGTTAGTGT...

Protein

1 records

下载 Protein FASTA

XP_057796613.1
MMARRAVVSAIDLIHRRGFLNRWSQKSGILYPLFSLFSSEAFQPKRSRIDFSCVKEVDDVIQLFQKIKSLRPEPSVRLYNKLMSVSVKIEQYSFALDVFGEMLRMGVPVNDCTRNIAVNCCCLLKDINSGFCIMGFFLKRGHEPDVVTFGTLIKGLFLINKEAEAVKLFEKILDLKLCEPNGVMILHVTDGLCKTGQVIEAHDWLHRLESSGWSPNVKAYSALIDGFCKGGMVDNAFKVLTKMVGKGILPDIVAYNTMIN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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