Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000250`

染色体: Chr02 坐标: 3233712-3236596 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000250`
名称	SmilChr02G000250
描述	F-box/kelch-repeat protein At3g23880-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	3233712 - 3236596 / `-`

ID 对照

NCBI Gene ID	`LOC131012654`
GeneID	`131012654`
locus_tag	`-`
NCBI Name	`LOC131012654`
原始查询	`LOC131012654`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g23880-like
产物	F-box/kelch-repeat protein At3g23880-like
Arabidopsis	`AT2G19630` (AT2G19630) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816482] identity=28.4; qcov=0.658; evalue=5.06e-09; confidence=low
Rice	`-` -
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131012654

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057796623.1`
2	Nucleus	细胞核	0.80000	`XP_057796625.1`
3	Cytosol	细胞质基质	0.20000	`XP_057796623.1`
4	Cell membrane	细胞膜	0.20000	`XP_057796624.1`
5	Endoplasmic reticulum	内质网	0.20000	`XP_057796626.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:3233773`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,C69
`Chr2:3235206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B45,B68,C6
`Chr2:3235270`	`A`	`AGT`	2bp_insertion	frameshift_variant	22	A18,B100,B14,B140,B24,B40,B49,B69,B82,B83,B84,C12,C17,C29,C33,C34,C35,C42,C43,C46,C50,C76
`Chr2:3235365`	`GGA`	`*`	2bp_deletion	CDS_variant	5	A11,A5,B7,B9,C30
`Chr2:3235377`	`C`	`CG`	1bp_insertion	frameshift_variant	11	A2,A8,B104,B110,B128,C37,C49,C62,C81,C87,D8
`Chr2:3235379`	`CCA`	`C`	2bp_deletion	frameshift_variant	11	A2,A8,B104,B110,B128,C37,C49,C62,C81,C87,D8
`Chr2:3235382`	`G`	`GC`	1bp_insertion	frameshift_variant	11	A2,A8,B104,B110,B128,C37,C49,C62,C81,C87,D8
`Chr2:3235520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C24,C55
`Chr2:3235547`	`CG`	`C`	1bp_deletion	frameshift_variant	2	C24,C55
`Chr2:3235547`	`CG`	`C`	1bp_deletion	CDS_variant	2	C24,C55
`Chr2:3235553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C20,C74,C83
`Chr2:3235585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B43,C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796623.1

354 aa

177

354

F-box

FBA_3

FBA_1

PF00646 F-box 7-46 aa PF08268 FBA_3 88-319 aa PF07734 FBA_1 93-283 aa

XP_057796624.1

331 aa

166

331

F-box

FBA_3

FBA_1

PF00646 F-box 7-46 aa PF08268 FBA_3 88-280 aa PF07734 FBA_1 93-283 aa

XP_057796625.1

293 aa

146

293

F-box

FBA_1

FBA_3

PF00646 F-box 7-46 aa PF07734 FBA_1 93-279 aa PF08268 FBA_3 95-264 aa

XP_057796626.1

257 aa

128

257

F-box

FBA_1

FBA_3

PF00646 F-box 7-46 aa PF07734 FBA_1 93-209 aa PF08268 FBA_3 95-206 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796623.1`	Pfam	`PF00646`	F-box	Domain	7	46	1.5e-08	34.9	F-box domain
`XP_057796623.1`	Pfam	`PF08268`	FBA_3	Repeat	88	319	1.1e-25	91.1	F-box associated beta propeller domain
`XP_057796623.1`	Pfam	`PF07734`	FBA_1	Repeat	93	283	1.5e-20	74.2	F-box associated beta propeller domain
`XP_057796624.1`	Pfam	`PF00646`	F-box	Domain	7	46	1.7e-08	34.7	F-box domain
`XP_057796624.1`	Pfam	`PF08268`	FBA_3	Repeat	88	280	3.3e-25	89.5	F-box associated beta propeller domain
`XP_057796624.1`	Pfam	`PF07734`	FBA_1	Repeat	93	283	1.3e-20	74.4	F-box associated beta propeller domain
`XP_057796625.1`	Pfam	`PF00646`	F-box	Domain	7	46	1.9e-08	34.6	F-box domain
`XP_057796625.1`	Pfam	`PF07734`	FBA_1	Repeat	93	279	2e-11	44.2	F-box associated beta propeller domain
`XP_057796625.1`	Pfam	`PF08268`	FBA_3	Repeat	95	264	4.6e-13	49.6	F-box associated beta propeller domain
`XP_057796626.1`	Pfam	`PF00646`	F-box	Domain	7	46	1.7e-08	34.7	F-box domain
`XP_057796626.1`	Pfam	`PF07734`	FBA_1	Repeat	93	209	4e-10	39.9	F-box associated beta propeller domain
`XP_057796626.1`	Pfam	`PF08268`	FBA_3	Repeat	95	206	2.6e-09	37.3	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XR_009097406.1
AAAAAAAAATGTTAAATTCGAAAAAGGTGGCAGTGGGGGCCACTGCATCAGACTTTAAGAAGTGCGGTGTTGAAAAGTGGTGTTTCCATTCCTTTGCAACATTTGTTCCCAATTTAAGAAACTGGAAAAAGCCTGTTCAACAAAGGTGCTTTTCAAGCCTCCCTAAATTGTGTGATGAAATCTTTATGACTCTCTCCAATTATTATCTGCTCCATGAATTTGTTCAACACAAAATGAAGCCAGATTTCTTTTTGTTATAC...

XR_009097404.1
AAAAAAAAATGTTAAATTCGAAAAAGGTGGCAGTGGGGGCCACTGCATCAGACTTTAAGAAGTGCGGTGTTGAAAAGTGGTGTTTCCATTCCTTTGCAACATTTGTTCCCAATTTAAGAAACTGGAAAAAGCCTGTTCAACAAAGGTGCTTTTCAAGCCTCCCTAAATTGTGTGATGAAATCTTTATGACTCTCTCCAATTATTATCTGCTCCATGAATTTGTTCAACACAAAATGAAGCCAGATTTCTTTTTGTTATAC...

CDS

4 records

下载 CDS FASTA

LOC131012654
ATGAAGCCAGATTTCTTCAAAAATCTACCACCAGAAATCATCACCGAGATCTTCTTAAGACTACCTGTTGTAAGCGTTCCAATAAGCAAATGTGTTTGCAAGCGATGGCTCCATCTGCTGGAGTCTGATGATTTTGTCAAGTCTCATTTTGCCAGATCCGCCCCCGCCCTCGTTGTTTTGGGGGATTCAGGTCGGTTGAAAGTTTTGGAGTGGGAAGGCGAGCTCGATCCACTCACCCAGTATGATTTCCCTTACCGCCC...

Protein

4 records

下载 Protein FASTA

XP_057796623.1
MKPDFFKNLPPEIITEIFLRLPVVSVPISKCVCKRWLHLLESDDFVKSHFARSAPALVVLGDSGRLKVLEWEGELDPLTQYDFPYRPREINTSVNGLLFLRLYLLLCVCNPITCEVIKLNLPSDPQKSFSKVSAFGFGASKITGRYKAVCFKYNDYDDKLDCHVYTLGTGSWRRLEGINPYVYQYDKGAFVNGNLHWTASIGEDSSWISCFDVETECFSFFKAPPYHAQGLPFTRGRSLCALSGCLWFCEEAFEYENDGG...

XP_057796624.1
MKPDFFKNLPPEIITEIFLRLPVVSVPISKCVCKRWLHLLESDDFVKSHFARSAPALVVLGDSGRLKVLEWEGELDPLTQYDFPYRPREINTSVNGLLFLRLYLLLCVCNPITCEVIKLNLPSDPQKSFSKVSAFGFGASKITGRYKAVCFKYNDYDDKLDCHVYTLGTGSWRRLEGINPYVYQYDKGAFVNGNLHWTASIGEDSSWISCFDVETECFSFFKAPPYHAQGLPFTRGRSLCALSGCLWFCEEAFEYENDGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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