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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000276

染色体: Chr02 坐标: 3529212-3531392 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000276
名称SmilChr02G000276
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向3529212 - 3531392 / -

ID 对照

NCBI Gene IDLOC131012677
GeneID131012677
locus_tag-
NCBI NameLOC131012677
原始查询LOC131012677

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G62670 (RPF2)
rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564]
identity=36.2; qcov=0.916; evalue=1.1e-122; confidence=medium
RiceOs08g0107800
-
identity=32.1; qcov=0.883; evalue=2.33e-100; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012677

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057796652.1
2 Chloroplast 叶绿体 0.20000 XP_057796652.1
3 Nucleus 细胞核 0.00000 XP_057796652.1
4 Chromosome 染色体 0.00000 XP_057796652.1
5 Centromere 着丝粒 0.00000 XP_057796652.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:3529376 C T EMS_canonical_SNV CDS_variant 2 C32,C64
Chr2:3529398 C T EMS_canonical_SNV CDS_variant 2 C26,C75
Chr2:3529445 G A EMS_canonical_SNV CDS_variant 5 B139,B44,B52,C3,C75
Chr2:3529451 C T EMS_canonical_SNV CDS_variant 3 B44,B52,C75
Chr2:3529646 G A EMS_canonical_SNV CDS_variant 3 C26,C75,C84
Chr2:3529667 C T EMS_canonical_SNV CDS_variant 1 B112
Chr2:3529710 TC T 1bp_deletion frameshift_variant 2 B126,D6
Chr2:3529710 TC T 1bp_deletion CDS_variant 2 B126,D6
Chr2:3529714 C CT 1bp_insertion frameshift_variant 2 B126,D6
Chr2:3529714 C CT 1bp_insertion CDS_variant 2 B126,D6
Chr2:3529778 C T EMS_canonical_SNV CDS_variant 4 B118,B59,C65,D2
Chr2:3529783 C T EMS_canonical_SNV CDS_variant 4 B118,B30,B59,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796652.1
642 aa
N
1
321
642
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR
C
PF13041 PPR_2 78-127 aa PF01535 PPR 83-110 aa PF12854 PPR_1 145-175 aa PF13041 PPR_2 148-198 aa PF01535 PPR 151-175 aa PF12854 PPR_1 182-209 aa PF13812 PPR_3 183-233 aa PF13041 PPR_2 184-235 aa PF01535 PPR 187-213 aa PF12854 PPR_1 219-246 aa PF13812 PPR_3 220-266 aa PF13041 PPR_2 221-270 aa PF23276 TPR_24 224-313 aa PF01535 PPR 225-254 aa PF12854 PPR_1 252-284 aa PF13041 PPR_2 256-305 aa PF01535 PPR 259-285 aa PF13812 PPR_3 280-338 aa PF12854 PPR_1 289-320 aa PF13041 PPR_2 291-339 aa PF01535 PPR 295-323 aa PF13812 PPR_3 323-373 aa PF12854 PPR_1 324-351 aa PF13041 PPR_2 326-375 aa PF01535 PPR 329-359 aa PF13812 PPR_3 349-407 aa PF12854 PPR_1 358-386 aa PF01535 PPR 364-386 aa PF13812 PPR_3 392-441 aa PF12854 PPR_1 393-425 aa PF13041 PPR_2 396-444 aa PF01535 PPR 399-426 aa PF17177 PPR_long 414-537 aa PF12854 PPR_1 429-460 aa PF01535 PPR 435-464 aa PF13041 PPR_2 435-480 aa PF23276 TPR_24 435-527 aa PF13812 PPR_3 455-513 aa PF12854 PPR_1 462-493 aa PF13041 PPR_2 466-514 aa PF01535 PPR 469-499 aa PF12854 PPR_1 497-528 aa PF13041 PPR_2 502-549 aa PF01535 PPR 504-534 aa PF13812 PPR_3 525-579 aa PF12854 PPR_1 532-565 aa PF01535 PPR 539-569 aa PF13041 PPR_2 544-585 aa PF13041 PPR_2 571-615 aa PF01535 PPR 574-604 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 78 127 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF01535 PPR Repeat 83 110 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF12854 PPR_1 Repeat 145 175 2.3e-137 447.1 PPR repeat
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 148 198 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF01535 PPR Repeat 151 175 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF12854 PPR_1 Repeat 182 209 2.3e-137 447.1 PPR repeat
XP_057796652.1 Pfam PF13812 PPR_3 Repeat 183 233 3.1e-67 223.3 Pentatricopeptide repeat domain
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 184 235 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF01535 PPR Repeat 187 213 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF12854 PPR_1 Repeat 219 246 2.3e-137 447.1 PPR repeat
XP_057796652.1 Pfam PF13812 PPR_3 Repeat 220 266 3.1e-67 223.3 Pentatricopeptide repeat domain
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 221 270 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF23276 TPR_24 Repeat 224 313 5.2e-36 124.2 Pentatricopeptide repeat-containing protein
XP_057796652.1 Pfam PF01535 PPR Repeat 225 254 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF12854 PPR_1 Repeat 252 284 2.3e-137 447.1 PPR repeat
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 256 305 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF01535 PPR Repeat 259 285 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF13812 PPR_3 Repeat 280 338 3.1e-67 223.3 Pentatricopeptide repeat domain
XP_057796652.1 Pfam PF12854 PPR_1 Repeat 289 320 2.3e-137 447.1 PPR repeat
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 291 339 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF01535 PPR Repeat 295 323 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF13812 PPR_3 Repeat 323 373 3.1e-67 223.3 Pentatricopeptide repeat domain
XP_057796652.1 Pfam PF12854 PPR_1 Repeat 324 351 2.3e-137 447.1 PPR repeat
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 326 375 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF01535 PPR Repeat 329 359 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF13812 PPR_3 Repeat 349 407 3.1e-67 223.3 Pentatricopeptide repeat domain
XP_057796652.1 Pfam PF12854 PPR_1 Repeat 358 386 2.3e-137 447.1 PPR repeat
XP_057796652.1 Pfam PF01535 PPR Repeat 364 386 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF13812 PPR_3 Repeat 392 441 3.1e-67 223.3 Pentatricopeptide repeat domain
XP_057796652.1 Pfam PF12854 PPR_1 Repeat 393 425 2.3e-137 447.1 PPR repeat
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 396 444 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF01535 PPR Repeat 399 426 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF17177 PPR_long Repeat 414 537 6.8e-28 98.2 Pentacotripeptide-repeat region of PRORP
XP_057796652.1 Pfam PF12854 PPR_1 Repeat 429 460 2.3e-137 447.1 PPR repeat
XP_057796652.1 Pfam PF01535 PPR Repeat 435 464 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 435 480 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF23276 TPR_24 Repeat 435 527 5.2e-36 124.2 Pentatricopeptide repeat-containing protein
XP_057796652.1 Pfam PF13812 PPR_3 Repeat 455 513 3.1e-67 223.3 Pentatricopeptide repeat domain
XP_057796652.1 Pfam PF12854 PPR_1 Repeat 462 493 2.3e-137 447.1 PPR repeat
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 466 514 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF01535 PPR Repeat 469 499 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF12854 PPR_1 Repeat 497 528 2.3e-137 447.1 PPR repeat
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 502 549 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF01535 PPR Repeat 504 534 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF13812 PPR_3 Repeat 525 579 3.1e-67 223.3 Pentatricopeptide repeat domain
XP_057796652.1 Pfam PF12854 PPR_1 Repeat 532 565 2.3e-137 447.1 PPR repeat
XP_057796652.1 Pfam PF01535 PPR Repeat 539 569 3.9e-99 318.9 PPR repeat
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 544 585 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF13041 PPR_2 Repeat 571 615 1.3e-174 567.0 PPR repeat family
XP_057796652.1 Pfam PF01535 PPR Repeat 574 604 3.9e-99 318.9 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057940669.1
AACACAACACCCACTTTGTTTATTTTCAATCAAATTAATCTGCTTTTGCACTTATCTTATCATCATACACCTTTTTCATTCATCTCTTCTAAACCTTCTAAAAAATTATCACATAAAAAGAAAAACTAGAGTGAGAATGAGTCGGAATCACGCTGCCATGATTTTGGGAAGAATTATCTCCAATTCTTCATTCAATTCATCCACTTTCCCCATTGCTTCGTTTCTTGTCAAACCCAGATTCAATTTTGATAATCTAAGCC...

CDS

1 records

下载 CDS FASTA
LOC131012677
ATGAGTCGGAATCACGCTGCCATGATTTTGGGAAGAATTATCTCCAATTCTTCATTCAATTCATCCACTTTCCCCATTGCTTCGTTTCTTGTCAAACCCAGATTCAATTTTGATAATCTAAGCCACCAAATTAAATACTTCTCCGCCTATCCCAGATTCGATTTTGGATCTATACGTGAGCCCAATGATGCCGTCGCTCTATTTCGGGAGATGGTAAGCACGGAGCCGCTTCCTTCTGTTAAGCTTTTCAATAATCTGTT...

Protein

1 records

下载 Protein FASTA
XP_057796652.1
MSRNHAAMILGRIISNSSFNSSTFPIASFLVKPRFNFDNLSHQIKYFSAYPRFDFGSIREPNDAVALFREMVSTEPLPSVKLFNNLLSVVVKMKQYSLALHLFDEMLKRNAPVNHYTMNIAIDGCCRLKRPDFGFAILGIFFKREYEPDVVTFTILIKGLLLVGRISEAAKVLGKLSAYHLCEPDEYMYSTIINGLCKAGDILQAIDLLCSLEKGKGSCKPNVCAYSIVIDALCKDGKVDEALQLFTSLGDKGISPNIVT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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