Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000353`

染色体: Chr02 坐标: 4558223-4573444 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000353`
名称	SmilChr02G000353
描述	probable ion channel POLLUX
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	4558223 - 4573444 / `-`

ID 对照

NCBI Gene ID	`LOC131012710`
GeneID	`131012710`
locus_tag	`-`
NCBI Name	`LOC131012710`
原始查询	`LOC131012710`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable ion channel POLLUX
产物	probable ion channel POLLUX
Arabidopsis	`AT5G49960` (AT5G49960) ion channel protein [Source:NCBI gene (formerly Entrezgene);Acc:835060] identity=76.1; qcov=0.709; evalue=0; confidence=high
Rice	`Os01g0870100` (OsPOLLUX) - identity=73.3; qcov=0.712; evalue=0; confidence=high
GO	GO:0006811 (monoatomic ion transport)
KEGG	-
Pfam	PF06241 (Castor_Poll_mid); PF22614 (Slo-like_RCK)
InterPro	-
eggNOG	-
NR	GeneID:131012710

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast membrane	叶绿体膜	0.80000	`XP_057796681.1`
2	Chloroplast	叶绿体	0.40000	`XP_057796680.1`
3	Cell membrane	细胞膜	0.20000	`XP_057796680.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057796683.1`
5	Golgi apparatus	高尔基体	0.20000	`XP_057796683.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:4558503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:4568864`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr2:4568903`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B46,B87,B89,B97,C60
`Chr2:4569751`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:4569802`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr2:4569947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:4570018`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr2:4570038`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B20
`Chr2:4572754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr2:4572930`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr2:4572950`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,C35,C44
`Chr2:4572952`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796680.1

948 aa

474

948

Slo-like_RCK

Castor_Poll_mid

PF22614 Slo-like_RCK 415-519 aa PF06241 Castor_Poll_mid 558-656 aa

XP_057796681.1

860 aa

430

860

Castor_Poll_mid

PF06241 Castor_Poll_mid 486-568 aa

XP_057796683.1

795 aa

398

795

Slo-like_RCK

Castor_Poll_mid

PF22614 Slo-like_RCK 415-519 aa PF06241 Castor_Poll_mid 558-656 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796680.1`	Pfam	`PF22614`	Slo-like_RCK	Domain	415	519	1.3e-09	38.5	Calcium-activated potassium channel slowpoke-like RCK domain
`XP_057796680.1`	Pfam	`PF06241`	Castor_Poll_mid	Family	558	656	2.1e-42	144.1	Castor and Pollux, part of voltage-gated ion channel
`XP_057796681.1`	Pfam	`PF06241`	Castor_Poll_mid	Family	486	568	8e-32	110.1	Castor and Pollux, part of voltage-gated ion channel
`XP_057796683.1`	Pfam	`PF22614`	Slo-like_RCK	Domain	415	519	4.2e-07	30.4	Calcium-activated potassium channel slowpoke-like RCK domain
`XP_057796683.1`	Pfam	`PF06241`	Castor_Poll_mid	Family	558	656	9e-42	142.0	Castor and Pollux, part of voltage-gated ion channel

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057940697.1
TCACTTGTAGTTTTGGGCCCTCCTGTTTATATTTATCTTGTCTTATCCCATAGGATAGGACCTACCAAGTCTCAGACACTCCTCCACCCCCGCTGTGACTGTGAGGCATCTCTAGCCCTCTCTCTCTCTCACACACACATAGAGAGAGAAGACATGAAGGAGGGCAACAGCGGGCAATCAAGTCCGGCGAAACCGGAGAGGCCACCGCTGAGCAAGAAATCCAGAACGACGTCCTCTAATTCCGACGATTCCCAAACCCC...

XM_057940698.1
TTTGGGCCCTCCTGTTTATATTTATCTTGTCTTATCCCATAGGATAGGACCTACCAAGTCTCAGACACTCCTCCACCCCCGCTGTGACTGTGAGGCATCTCTAGCCCTCTCTCTCTCTCACACACACATAGAGAGAGAAGACATGAAGGAGGGCAACAGCGGGCAATCAAGTCCGGCGAAACCGGAGAGGCCACCGCTGAGCAAGAAATCCAGAACGACGTCCTCTAATTCCGACGATTCCCAAACCCCACACTTTCCCG...

CDS

3 records

下载 CDS FASTA

LOC131012710
ATGAAGGAGGGCAACAGCGGGCAATCAAGTCCGGCGAAACCGGAGAGGCCACCGCTGAGCAAGAAATCCAGAACGACGTCCTCTAATTCCGACGATTCCCAAACCCCACACTTTCCCGGCCCCCTCTTCCGCCGCATCTCCCAAACCCCTCCTTCTAGTTGTTCCGCCGCCTCCTCCACTGCCACCGCCACGTCTTCCTCCGCCTCCACCAGCAGCAGTAGCGAGGCCTTCAGCTTCAATTTCTCGGACCGGGATTACGT...

Protein

3 records

下载 Protein FASTA

XP_057796680.1
MKEGNSGQSSPAKPERPPLSKKSRTTSSNSDDSQTPHFPGPLFRRISQTPPSSCSAASSTATATSSSASTSSSSEAFSFNFSDRDYVFPSNLGGYSTRRNVSVKSSSSFPKSQPPPPQLSARSASMPPSLSSGGGGGLTSPLNKLRLRADKDLKALSLQASLGLVSAPAVASVSGNHDTVIQKSSSFNNSWRVYLLKFFCFTSATFAIFLRNEVSRLKDEYANLQRFCSNENPDHNKHLEVSVENGSSFLSSVNSDPRAI...

XP_057796681.1
MKEGNSGQSSPAKPERPPLSKKSRTTSSNSDDSQTPHFPGPLFRRISQTPPSSCSAASSTATATSSSASTSSSSEAFSFNFSDRDYVFPSNLGGYSTRRNVSVKSSSSFPKSQPPPPQLSARSASMPPSLSSGGGGGLTSPLNKLRLRADKDLKALSLQASLGLVSAPAVASVSGNHDTVIQKSSSFNNSWRVYLLKFFCFTSATFAIFLRNEVSRLKDEYANLQRFCSNENPDHNKHLEVSVENGSSFLSSVNSDPRAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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