Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000367`

染色体: Chr02 坐标: 4679622-4684080 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000367`
名称	SmilChr02G000367
描述	protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	4679622 - 4684080 / `+`

ID 对照

NCBI Gene ID	`LOC131012719`
GeneID	`131012719`
locus_tag	`-`
NCBI Name	`LOC131012719`
原始查询	`LOC131012719`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic-like
产物	protein ACTIVITY OF BC1 COMPLEX KINASE 7%2C chloroplastic-like
Arabidopsis	`AT3G07700` (AT3G07700) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819961] identity=65.5; qcov=0.964; evalue=0; confidence=high
Rice	`Os09g0250700` - identity=66.2; qcov=0.893; evalue=0; confidence=high
GO	GO:0046467 (GO:0046467); GO:1901031 (regulation of response to reactive oxygen species)
KEGG	-
Pfam	PF03109 (ABC1)
InterPro	-
eggNOG	-
NR	GeneID:131012719

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057796695.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057796695.1`
3	Chloroplast thylakoid	类囊体	1.00000	`XP_057796695.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057796695.1`
5	Nucleus	细胞核	0.00000	`XP_057796695.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:4680495`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr2:4680579`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B26,B80,D7
`Chr2:4680588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,C76
`Chr2:4680675`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B26,B80,D7
`Chr2:4680756`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:4681220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A9,B124,B129,B49
`Chr2:4681248`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A9,B124,B129,B49
`Chr2:4681262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B36,B88
`Chr2:4681590`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	C35
`Chr2:4681590`	`TCA`	`T`	2bp_deletion	CDS_variant	1	C35
`Chr2:4681674`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B14,C4,C57
`Chr2:4681803`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796695.1

701 aa

350

701

ABC1

PF03109 ABC1 233-479 aa

XP_057796696.1

580 aa

290

580

ABC1

PF03109 ABC1 233-479 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796695.1`	Pfam	`PF03109`	ABC1	Domain	233	479	9.9e-87	290.9	ABC1 atypical kinase-like domain
`XP_057796696.1`	Pfam	`PF03109`	ABC1	Domain	233	479	6.8e-87	291.4	ABC1 atypical kinase-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009097424.1
GTGGAATGGGAAATAAATGATTCCATGTTGACAAATAATGAATTCCAATATATATCTTTTCAAGTATTTTTGGCTATTGAGCGTCAAACATGGTAGACATTTCAAGAAAGTGGAAGTCCCATCTTTCCTTATATTCAAACATTGCATTCCATCAAGACTGAGGAGAGAGGCTCAACACCTTCTACATTGTGATTCCTCCATTTTCAACTGTTTTTTGCACATTAAATGGCTGCTGCTGCTGGTGTAGTATTGGCTTGTGA...

XM_057940713.1
TGGAATGGGAAATAAATGATTCCATGTTGACAAATAATGAATTCCAATATATATCTTTTCAAGTATTTTTGGCTATTGAGCGTCAAACATGGTAGACATTTCAAGAAAGTGGAAGTCCCATCTTTCCTTATATTCAAACATTGCATTCCATCAAGACTGAGGAGAGAGGCTCAACACCTTCTACATTGTGATTCCTCCATTTTCAACTGTTTTTTGCACATTAAATGGCTGCTGCTGCTGGTGTAGTATTGGCTTGTGAT...

CDS

2 records

下载 CDS FASTA

LOC131012719
ATGGCTGCTGCTGCTGGTGTAGTATTGGCTTGTGATACTTACTGTCACAGCAAAGGGGAGATGATGAATCATGGAAGATTAGGAGATAATCTTAGTTTTTTGGGTTCATTGAAAAGCTACAATAAGGTTAAAACTAGGAAACTTACTAGGCTTCGAGTTGAAATGCAAAAGAGAGAATTGCCACCGGCGCAATTAGGCAGGTATGGTAGAGTTATCAAAATGGTACCTACGAGCGAAATCAGAAAGGGATCCATGGATAA...

Protein

2 records

下载 Protein FASTA

XP_057796695.1
MAAAAGVVLACDTYCHSKGEMMNHGRLGDNLSFLGSLKSYNKVKTRKLTRLRVEMQKRELPPAQLGRYGRVIKMVPTSEIRKGSMDKPEIVNGSVIAKKVNGVHVAMPTGRSLVKKDPTKLSRPKELPPIEGPKALPCDESFSWANENYNSVQRTIDVWSSLISLRIRVLLDNAKWTYIGGFSEEKQKQRRRKTASWLRECILQLGPTLIKLGQLLSTRSDIFPIEYVEELSKLQDRVPAFTSTKAKKLIEKELGTPVHV...

XP_057796696.1
MAAAAGVVLACDTYCHSKGEMMNHGRLGDNLSFLGSLKSYNKVKTRKLTRLRVEMQKRELPPAQLGRYGRVIKMVPTSEIRKGSMDKPEIVNGSVIAKKVNGVHVAMPTGRSLVKKDPTKLSRPKELPPIEGPKALPCDESFSWANENYNSVQRTIDVWSSLISLRIRVLLDNAKWTYIGGFSEEKQKQRRRKTASWLRECILQLGPTLIKLGQLLSTRSDIFPIEYVEELSKLQDRVPAFTSTKAKKLIEKELGTPVHV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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