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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G000344

染色体: Chr02 坐标: 4492434-4494949 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G000344
名称SmilChr02G000344
描述pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向4492434 - 4494949 / -

ID 对照

NCBI Gene IDLOC131012721
GeneID131012721
locus_tag-
NCBI NameLOC131012721
原始查询LOC131012721

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g62680, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g62680%2C mitochondrial-like
ArabidopsisAT1G12620 (AT1G12620)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837818]
identity=32.2; qcov=0.906; evalue=8.29e-110; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=31.1; qcov=0.883; evalue=1.78e-90; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131012721

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057796698.1
2 Nucleus 细胞核 0.00000 XP_057796698.1
3 Chromosome 染色体 0.00000 XP_057796698.1
4 Centromere 着丝粒 0.00000 XP_057796698.1
5 Chromatin 染色质 0.00000 XP_057796698.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:4492923 C T EMS_canonical_SNV CDS_variant 2 B132,C70
Chr2:4492925 C T EMS_canonical_SNV CDS_variant 2 B132,C70
Chr2:4492951 C T EMS_canonical_SNV CDS_variant 3 B117,B14,C4
Chr2:4492997 C CAT 2bp_insertion frameshift_variant 4 B117,B14,B83,C4
Chr2:4492997 C CAT 2bp_insertion CDS_variant 4 B117,B14,B83,C4
Chr2:4492999 ACG A 2bp_deletion frameshift_variant 4 B117,B14,B83,C4
Chr2:4492999 ACG A 2bp_deletion CDS_variant 4 B117,B14,B83,C4
Chr2:4493042 C T EMS_canonical_SNV CDS_variant 4 B132,B54,C10,C6
Chr2:4493056 C T EMS_canonical_SNV CDS_variant 3 A23,B134,B7
Chr2:4493089 G A EMS_canonical_SNV CDS_variant 2 B117,C35
Chr2:4493156 GC G 1bp_deletion frameshift_variant 1 C46
Chr2:4493156 GC G 1bp_deletion CDS_variant 1 C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796698.1
669 aa
N
1
334
669
PPR_1
PPR
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_long
PPR_3
TPR_24
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR_3
PPR_2
PPR
C
PF12854 PPR_1 141-172 aa PF01535 PPR 148-175 aa PF13041 PPR_2 188-230 aa PF01535 PPR 189-213 aa PF17177 PPR_long 202-308 aa PF13812 PPR_3 207-261 aa PF12854 PPR_1 214-244 aa PF01535 PPR 220-248 aa PF13041 PPR_2 220-264 aa PF12854 PPR_1 248-278 aa PF01535 PPR 254-284 aa PF13812 PPR_3 275-330 aa PF12854 PPR_1 282-309 aa PF13041 PPR_2 286-334 aa PF01535 PPR 290-319 aa PF13812 PPR_3 310-365 aa PF12854 PPR_1 317-350 aa PF13041 PPR_2 322-359 aa PF01535 PPR 325-351 aa PF17177 PPR_long 338-456 aa PF13812 PPR_3 344-402 aa PF12854 PPR_1 354-385 aa PF13041 PPR_2 356-404 aa PF01535 PPR 360-389 aa PF12854 PPR_1 387-419 aa PF13041 PPR_2 391-440 aa PF01535 PPR 394-423 aa PF13812 PPR_3 415-470 aa PF12854 PPR_1 423-454 aa PF13041 PPR_2 427-474 aa PF01535 PPR 429-458 aa PF13041 PPR_2 462-510 aa PF01535 PPR 464-494 aa PF17177 PPR_long 479-609 aa PF13812 PPR_3 484-541 aa PF23276 TPR_24 487-558 aa PF12854 PPR_1 493-525 aa PF01535 PPR 500-529 aa PF13041 PPR_2 507-545 aa PF12854 PPR_1 527-557 aa PF01535 PPR 534-564 aa PF13041 PPR_2 539-579 aa PF13812 PPR_3 555-610 aa PF13041 PPR_2 566-609 aa PF01535 PPR 570-599 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057796698.1 Pfam PF12854 PPR_1 Repeat 141 172 5.1e-128 417.1 PPR repeat
XP_057796698.1 Pfam PF01535 PPR Repeat 148 175 2.7e-96 310.0 PPR repeat
XP_057796698.1 Pfam PF13041 PPR_2 Repeat 188 230 2.4e-148 482.9 PPR repeat family
XP_057796698.1 Pfam PF01535 PPR Repeat 189 213 2.7e-96 310.0 PPR repeat
XP_057796698.1 Pfam PF17177 PPR_long Repeat 202 308 1.6e-33 116.6 Pentacotripeptide-repeat region of PRORP
XP_057796698.1 Pfam PF13812 PPR_3 Repeat 207 261 2.3e-65 217.3 Pentatricopeptide repeat domain
XP_057796698.1 Pfam PF12854 PPR_1 Repeat 214 244 5.1e-128 417.1 PPR repeat
XP_057796698.1 Pfam PF01535 PPR Repeat 220 248 2.7e-96 310.0 PPR repeat
XP_057796698.1 Pfam PF13041 PPR_2 Repeat 220 264 2.4e-148 482.9 PPR repeat family
XP_057796698.1 Pfam PF12854 PPR_1 Repeat 248 278 5.1e-128 417.1 PPR repeat
XP_057796698.1 Pfam PF01535 PPR Repeat 254 284 2.7e-96 310.0 PPR repeat
XP_057796698.1 Pfam PF13812 PPR_3 Repeat 275 330 2.3e-65 217.3 Pentatricopeptide repeat domain
XP_057796698.1 Pfam PF12854 PPR_1 Repeat 282 309 5.1e-128 417.1 PPR repeat
XP_057796698.1 Pfam PF13041 PPR_2 Repeat 286 334 2.4e-148 482.9 PPR repeat family
XP_057796698.1 Pfam PF01535 PPR Repeat 290 319 2.7e-96 310.0 PPR repeat
XP_057796698.1 Pfam PF13812 PPR_3 Repeat 310 365 2.3e-65 217.3 Pentatricopeptide repeat domain
XP_057796698.1 Pfam PF12854 PPR_1 Repeat 317 350 5.1e-128 417.1 PPR repeat
XP_057796698.1 Pfam PF13041 PPR_2 Repeat 322 359 2.4e-148 482.9 PPR repeat family
XP_057796698.1 Pfam PF01535 PPR Repeat 325 351 2.7e-96 310.0 PPR repeat
XP_057796698.1 Pfam PF17177 PPR_long Repeat 338 456 1.6e-33 116.6 Pentacotripeptide-repeat region of PRORP
XP_057796698.1 Pfam PF13812 PPR_3 Repeat 344 402 2.3e-65 217.3 Pentatricopeptide repeat domain
XP_057796698.1 Pfam PF12854 PPR_1 Repeat 354 385 5.1e-128 417.1 PPR repeat
XP_057796698.1 Pfam PF13041 PPR_2 Repeat 356 404 2.4e-148 482.9 PPR repeat family
XP_057796698.1 Pfam PF01535 PPR Repeat 360 389 2.7e-96 310.0 PPR repeat
XP_057796698.1 Pfam PF12854 PPR_1 Repeat 387 419 5.1e-128 417.1 PPR repeat
XP_057796698.1 Pfam PF13041 PPR_2 Repeat 391 440 2.4e-148 482.9 PPR repeat family
XP_057796698.1 Pfam PF01535 PPR Repeat 394 423 2.7e-96 310.0 PPR repeat
XP_057796698.1 Pfam PF13812 PPR_3 Repeat 415 470 2.3e-65 217.3 Pentatricopeptide repeat domain
XP_057796698.1 Pfam PF12854 PPR_1 Repeat 423 454 5.1e-128 417.1 PPR repeat
XP_057796698.1 Pfam PF13041 PPR_2 Repeat 427 474 2.4e-148 482.9 PPR repeat family
XP_057796698.1 Pfam PF01535 PPR Repeat 429 458 2.7e-96 310.0 PPR repeat
XP_057796698.1 Pfam PF13041 PPR_2 Repeat 462 510 2.4e-148 482.9 PPR repeat family
XP_057796698.1 Pfam PF01535 PPR Repeat 464 494 2.7e-96 310.0 PPR repeat
XP_057796698.1 Pfam PF17177 PPR_long Repeat 479 609 1.6e-33 116.6 Pentacotripeptide-repeat region of PRORP
XP_057796698.1 Pfam PF13812 PPR_3 Repeat 484 541 2.3e-65 217.3 Pentatricopeptide repeat domain
XP_057796698.1 Pfam PF23276 TPR_24 Repeat 487 558 1.3e-33 116.5 Pentatricopeptide repeat-containing protein
XP_057796698.1 Pfam PF12854 PPR_1 Repeat 493 525 5.1e-128 417.1 PPR repeat
XP_057796698.1 Pfam PF01535 PPR Repeat 500 529 2.7e-96 310.0 PPR repeat
XP_057796698.1 Pfam PF13041 PPR_2 Repeat 507 545 2.4e-148 482.9 PPR repeat family
XP_057796698.1 Pfam PF12854 PPR_1 Repeat 527 557 5.1e-128 417.1 PPR repeat
XP_057796698.1 Pfam PF01535 PPR Repeat 534 564 2.7e-96 310.0 PPR repeat
XP_057796698.1 Pfam PF13041 PPR_2 Repeat 539 579 2.4e-148 482.9 PPR repeat family
XP_057796698.1 Pfam PF13812 PPR_3 Repeat 555 610 2.3e-65 217.3 Pentatricopeptide repeat domain
XP_057796698.1 Pfam PF13041 PPR_2 Repeat 566 609 2.4e-148 482.9 PPR repeat family
XP_057796698.1 Pfam PF01535 PPR Repeat 570 599 2.7e-96 310.0 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XR_009097425.1
TTCAGTAAAATCGCAAACTCCATTCATCCCAACCTGACCGATTAAGGATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGCATAAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCAGTGTTAAAGAATTAAATGATGCTATTGAATTGTTTCATAAAATAAAGAGTATG...
XM_057940715.1
TTCAGTAAAATCGCAAACTCCATTCATCCCAACCTGACCGATTAAGGATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGCATAAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCAGTGTTAAAGAATTAAATGATGCTATTGAATTGTTTCATAAAATAAAGAGTATG...

CDS

1 records

下载 CDS FASTA
LOC131012721
ATGATGGCCAGAAGAGCTGTTGTTTCTGCAATTGATCTCATTCATCGAAGAGGATTTCTCAATCGATGGTCGCAGCATAAATCGGGTATTCTCTCTCCTCTGTTCTCTCTCTTCTCTTCCGAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCAGTGTTAAAGAATTAAATGATGCTATTGAATTGTTTCATAAAATAAAGAGTATGCGGCCAGAGCCTTCTGTTCACCTCTACGCCAAACTCATGAGTGTTAG...

Protein

1 records

下载 Protein FASTA
XP_057796698.1
MMARRAVVSAIDLIHRRGFLNRWSQHKSGILSPLFSLFSSEAFQPKQPRIDFSSVKELNDAIELFHKIKSMRPEPSVHLYAKLMSVSAKIEQYYFALDVFDEMLGMGVPVNNYTRNIAVNCCCLLKDIYSAFSIMGFFLKRGHEPDVVTFGTLIKGLFLVNKEAEAVKLFEKILDLKLCEPSDVMILHVIDGLCKTGQAIEAHDWLHRLESSGWSPNVNTYSSMINAYCKEEKMEAAENMLEIMMQQNICPNVFTYSSLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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