Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G000394`

染色体: Chr02 坐标: 4879706-4883190 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G000394`
名称	SmilChr02G000394
描述	probable UDP-arabinose 4-epimerase 3
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	4879706 - 4883190 / `-`

ID 对照

NCBI Gene ID	`LOC131012743`
GeneID	`131012743`
locus_tag	`-`
NCBI Name	`LOC131012743`
原始查询	`LOC131012743`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable UDP-arabinose 4-epimerase 3
产物	probable UDP-arabinose 4-epimerase 3
Arabidopsis	`AT4G20460` (AT4G20460) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827794] identity=79.2; qcov=0.97; evalue=0; confidence=high
Rice	`Os08g0129700` (UEL-3) - identity=77.7; qcov=0.973; evalue=0; confidence=high
GO	GO:0003978 (UDP-glucose 4-epimerase activity); GO:0005829 (cytosol); GO:0033499 (beta-D-galactose catabolic process via UDP-galactose, Leloir pathway)
KEGG	smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF07993 (NAD_binding_4); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131012743

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057796726.1`
2	Endoplasmic reticulum	内质网	0.40000	`XP_057796726.1`
3	Vacuole	液泡	0.20000	`XP_057796726.1`
4	Nucleus	细胞核	0.00000	`XP_057796726.1`
5	Chromosome	染色体	0.00000	`XP_057796726.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:4880205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr2:4880249`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B71
`Chr2:4880249`	`TA`	`T`	1bp_deletion	CDS_variant	1	B71
`Chr2:4880433`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B137,B139,C14,C5
`Chr2:4880446`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr2:4880475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,C13
`Chr2:4881039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B17,B34,B77
`Chr2:4881114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B129,B21,C20,C64
`Chr2:4881490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr2:4881609`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr2:4881651`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C39
`Chr2:4881651`	`AC`	`A`	1bp_deletion	CDS_variant	1	C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057796726.1

401 aa

200

401

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

NAD_binding_10

PF04321 RmlD_sub_bind 62-241 aa PF02719 Polysacc_synt_2 63-243 aa PF01370 Epimerase 63-324 aa PF01073 3Beta_HSD 64-223 aa PF16363 GDP_Man_Dehyd 64-379 aa PF07993 NAD_binding_4 65-247 aa PF13460 NAD_binding_10 67-238 aa

XP_057796727.1

401 aa

200

401

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

NAD_binding_10

XP_057796728.1

401 aa

200

401

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

NAD_binding_10

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057796726.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	62	241	1.4e-11	44.8	RmlD substrate binding domain
`XP_057796726.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	63	243	9.2e-14	52.0	Polysaccharide biosynthesis protein
`XP_057796726.1`	Pfam	`PF01370`	Epimerase	Family	63	324	2.1e-50	172.1	NAD dependent epimerase/dehydratase family
`XP_057796726.1`	Pfam	`PF01073`	3Beta_HSD	Family	64	223	5.4e-13	49.3	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057796726.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	64	379	6.9e-52	177.7	GDP-mannose 4,6 dehydratase
`XP_057796726.1`	Pfam	`PF07993`	NAD_binding_4	Family	65	247	1.2e-07	31.9	Male sterility protein
`XP_057796726.1`	Pfam	`PF13460`	NAD_binding_10	Domain	67	238	3.8e-08	34.1	NAD(P)H-binding
`XP_057796727.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	62	241	1.4e-11	44.8	RmlD substrate binding domain
`XP_057796727.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	63	243	9.2e-14	52.0	Polysaccharide biosynthesis protein
`XP_057796727.1`	Pfam	`PF01370`	Epimerase	Family	63	324	2.1e-50	172.1	NAD dependent epimerase/dehydratase family
`XP_057796727.1`	Pfam	`PF01073`	3Beta_HSD	Family	64	223	5.4e-13	49.3	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057796727.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	64	379	6.9e-52	177.7	GDP-mannose 4,6 dehydratase
`XP_057796727.1`	Pfam	`PF07993`	NAD_binding_4	Family	65	247	1.2e-07	31.9	Male sterility protein
`XP_057796727.1`	Pfam	`PF13460`	NAD_binding_10	Domain	67	238	3.8e-08	34.1	NAD(P)H-binding
`XP_057796728.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	62	241	1.4e-11	44.8	RmlD substrate binding domain
`XP_057796728.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	63	243	9.2e-14	52.0	Polysaccharide biosynthesis protein
`XP_057796728.1`	Pfam	`PF01370`	Epimerase	Family	63	324	2.1e-50	172.1	NAD dependent epimerase/dehydratase family
`XP_057796728.1`	Pfam	`PF01073`	3Beta_HSD	Family	64	223	5.4e-13	49.3	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057796728.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	64	379	6.9e-52	177.7	GDP-mannose 4,6 dehydratase
`XP_057796728.1`	Pfam	`PF07993`	NAD_binding_4	Family	65	247	1.2e-07	31.9	Male sterility protein
`XP_057796728.1`	Pfam	`PF13460`	NAD_binding_10	Domain	67	238	3.8e-08	34.1	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057940743.1
TCCAATTCCCTTCGGCCACTTCCTCTTTCTTACCAAGAAGAGACTTGGACTCTCTCTCTCTCTCACGCACGAAGACACACACACAGACTAAACGTGAATGCATGGTTGAATTCATTTTTTTCGGCAGTATTTTGGTGTCAATATACGTTTTCTCCTCATTTCATGGCTTTCTTCATGTTGCTATACTCATCAAACACCAAGCTCCATTTTTTCTTTCGTCACATTTATCTCATTCTATGCCACTCTCTCACACACACACA...

XM_057940745.1
ATCAGTCTTTTTCTTTCACCAAACTTCTCATTAAAATGAATTTAATTTGGAATTAATGCTTTGAAACTAGATTTTTTATTTTATTTTATTTTATTTTATTTCATTGATTTATTTGCATGGTTGTTTCTGAGTTTGGGGTGGGAGCTAAAAGTCAGAAGTTTTAATTTTATTTACCTTGATGTTCAATTAGGTTGAGTTGATTTTTCTTGTAAAAAAAGTCGTGATTTTTGCCAAACTGTATTTATTTACTTGGAACCCCC...

CDS

3 records

下载 CDS FASTA

LOC131012743
ATGCTGCTTAAGGATCACAATTCAAGTGTAGGGATGGATTACATAGAGATGAAGCGACGGAGCAGCTTCACGAGAAGGATCCTCTTGGCCGTTGTTGTTTCCGCGCTTTTGATCTTCATGGTTAAAGGCCCTTCTAGTATTAGTGGCTCTTCAAAGTTTTCTGAGCACGAGGCAGGCGTCACACATGTCCTAGTGACGGGGGGTGCAGGCTACATCGGCTCCCATGCTGTTCTTCGCCTTCTGAGGGATTCATACCGCGT...

Protein

3 records

下载 Protein FASTA

XP_057796726.1
MLLKDHNSSVGMDYIEMKRRSSFTRRILLAVVVSALLIFMVKGPSSISGSSKFSEHEAGVTHVLVTGGAGYIGSHAVLRLLRDSYRVTIVDNLSRGNMGAVRILQGLYPEPGRLQFIYADLGDAAAVDKIFSENAFDAVMHFAAVAYVGESTAEPLRYYHNITSNTLLVVKAMAAHGVKTLIYSSTCATYGEPDKMPITETTPQVPINPYGKAKKMAEDIIIDFSKTTDMAVMILRYFNVIGSDPEGRLGEAPRPELREQ...

XP_057796727.1
MLLKDHNSSVGMDYIEMKRRSSFTRRILLAVVVSALLIFMVKGPSSISGSSKFSEHEAGVTHVLVTGGAGYIGSHAVLRLLRDSYRVTIVDNLSRGNMGAVRILQGLYPEPGRLQFIYADLGDAAAVDKIFSENAFDAVMHFAAVAYVGESTAEPLRYYHNITSNTLLVVKAMAAHGVKTLIYSSTCATYGEPDKMPITETTPQVPINPYGKAKKMAEDIIIDFSKTTDMAVMILRYFNVIGSDPEGRLGEAPRPELREQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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