当前解析结果
SmilChr02G000355| 统一新 Gene ID | SmilChr02G000355 |
|---|---|
| 名称 | SmilChr02G000355 |
| 描述 | fasciclin-like arabinogalactan protein 7 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 4592138 - 4593203 / + |
| NCBI Gene ID | LOC131012755 |
|---|---|
| GeneID | 131012755 |
| locus_tag | - |
| NCBI Name | LOC131012755 |
| 原始查询 | LOC131012755 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fasciclin-like arabinogalactan protein 7 |
| 产物 | fasciclin-like arabinogalactan protein 7 |
| Arabidopsis | AT2G04780 (FLA7)FASCICLIN-like arabinoogalactan 7 [Source:NCBI gene (formerly Entrezgene);Acc:815021] identity=57.7; qcov=0.74; evalue=5.35e-70; confidence=high |
| Rice | Os09g0482780 (OsFLA27)- identity=58.4; qcov=0.588; evalue=6.89e-61; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF02469 (Fasciclin) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131012755 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057796743.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057796743.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057796743.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057796743.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057796743.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:4592204 |
GA |
G |
1bp_deletion | frameshift_variant | 185 | A1,A10,A13,A14,A15,A16,A19,A20,A21,A22,A23,A24,A4,A5,A8,A9,B1,B10,B100,B103,B107,B109,B11,B110,B112,B114,B115,B117,B118,B119,B12,B121,B122,B123,B125,B128,B129,B130,B131,B132,B133,B134,B136,B138,B139,B14,B140,B16,B17,B18,B19,B20,B24,B26,B27,B29,B3,B30,B31,B32,B36,B37,B38,B39,B40,B41,B42,B43,B44,B47,B48,B49,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B65,B66,B67,B68,B69,B7,B70,B71,B73,B74,B75,B77,B78,B79,B80,B81,B84,B85,B86,B87,B90,B92,B93,B94,B95,B96,B97,B98,C1,C11,C12,C13,C15,C16,C18,C19,C2,C20,C21,C24,C25,C26,C28,C29,C3,C30,C31,C32,C34,C38,C4,C40,C41,C43,C45,C47,C48,C49,C50,C51,C53,C54,C55,C56,C57,C59,C60,C61,C62,C63,C65,C67,C68,C69,C7,C71,C72,C73,C74,C75,C78,C79,C8,C80,C81,C83,C85,C86,C9,D1,D10,D11,D4,D5,D6,D7,D8,D9 |
Chr2:4592222 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,B40,B86,C25,C47 |
Chr2:4592246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:4592274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,B83 |
Chr2:4592280 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr2:4592283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,B26,C27 |
Chr2:4592330 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr2:4592471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B134,B95 |
Chr2:4592552 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr2:4592573 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,C35,C44 |
Chr2:4592606 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B109,B30,B82,C15,D6 |
Chr2:4592794 |
CA |
C |
1bp_deletion | frameshift_variant | 178 | A1,A10,A11,A14,A16,A19,A2,A20,A22,A23,A24,A25,A3,A4,A7,A9,B1,B101,B103,B104,B105,B107,B108,B109,B11,B111,B114,B115,B119,B12,B120,B121,B122,B123,B124,B127,B129,B132,B133,B134,B135,B136,B137,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B25,B28,B29,B30,B31,B32,B33,B34,B36,B38,B39,B4,B41,B42,B44,B45,B46,B47,B49,B5,B50,B51,B53,B55,B57,B58,B59,B61,B62,B63,B65,B66,B68,B69,B7,B70,B72,B73,B74,B75,B76,B8,B80,B81,B82,B83,B85,B87,B88,B89,B9,B90,B91,B92,B94,B97,B99,C1,C10,C14,C15,C16,C17,C19,C21,C22,C23,C24,C26,C28,C29,C30,C31,C33,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C62,C64,C65,C66,C70,C71,C74,C77,C78,C8,C80,C81,C84,C85,C86,C87,D10,D11,D2,D3,D6,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057796743.1PF02469
Fasciclin 55-188 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057796743.1 |
Pfam | PF02469 |
Fasciclin | Domain | 55 | 188 | 9.1e-21 | 75.1 | Fasciclin domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。